; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS007060 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007060
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationscaffold430:217644..218755
RNA-Seq ExpressionMS007060
SyntenyMS007060
Gene Ontology termsGO:0006402 - mRNA catabolic process (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030014 - CCR4-NOT complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsIPR006941 - Ribonuclease CAF1
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146384.1 putative CCR4-associated factor 1 homolog 8 [Momordica charantia]2.1e-13175Show/hide
Query:  NENTFKVKNSPESMEKTF-GKSPTAPRSVHQNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLA
        N+N F+V  S E+MEK    KS  APRS+  NREVWS NL +ELE+LNEYLPEFP+V ID EFPGFL  TPKG+SEEEFY CLRFNVNRLNILQLGLTLA
Subjt:  NENTFKVKNSPESMEKTF-GKSPTAPRSVHQNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLA

Query:  DQNGNVAMTWEFNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLKL----HIPISMATFAAT
        DQ GN+AMTWEFNFRDFDH+SDME VSSLDSFLKNKGFDFYKLK+ GIA EDFTTLFLPICRSG+I+RWITFHGFYDI YLLKL     IPISMATFA T
Subjt:  DQNGNVAMTWEFNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLKL----HIPISMATFAAT

Query:  AQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMTPP
        AQHLLGTVSDLKHM RYCDGLLDG+LGLKKLAKLLDVKRI  AHFA SD+L T +VYTKMKQ+FK+P+EQ EGFLYGLP+ I  F+ + KI+DPS MTPP
Subjt:  AQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMTPP

Query:  PP---RLPTLCFGSFPPFFI
        PP   +   L F S  P  +
Subjt:  PP---RLPTLCFGSFPPFFI

XP_022153955.1 putative CCR4-associated factor 1 homolog 8 [Momordica charantia]7.1e-10368.86Show/hide
Query:  MEKTFGKSPTAPRSVHQNREVWSYNLPKELEILNEYLPEFPIVAIDTEF---PGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWE
        MEKT   S  APRSV + +EVWS+NL +ELE+LNEY+PEF +V ID  +      LR +P               + RLNILQLGLTL DQ  NVAMT E
Subjt:  MEKTFGKSPTAPRSVHQNREVWSYNLPKELEILNEYLPEFPIVAIDTEF---PGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWE

Query:  FNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLK----LHIPISMATFAATAQHLLGTVSDL
        FNFRDFDHISDM+G+S LD FLKN GFDFYKLK+DGI  E+FTTLFLPIC SGRIER ITFHGFY+IAYLLK      IPI MATFAATAQHLLG +S+L
Subjt:  FNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLK----LHIPISMATFAATAQHLLGTVSDL

Query:  KHMCRYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMTPP
        KHM RYCDGLLDG+L LKK AKLLDVKRIG AHFAG DSLLTA++YTKMKQMFK+P+EQ EGFLY LPHRI+AF  I+KI++PSA TPP
Subjt:  KHMCRYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMTPP

XP_022154798.1 probable CCR4-associated factor 1 homolog 6 [Momordica charantia]2.5e-16488.86Show/hide
Query:  MEKTFGKSPTAPRSVHQNREVWSYNLPKELEILNEYLPEFPIVAIDTEF-----------------------------PGFLRYTPKGVSEEEFYDCLRF
        MEKTFGKSPTAPRSVHQNREVWSYNL KELEILNEYLPEFPIVAIDTEF                             PGFLRYTPKGVSEEEFYDCLRF
Subjt:  MEKTFGKSPTAPRSVHQNREVWSYNLPKELEILNEYLPEFPIVAIDTEF-----------------------------PGFLRYTPKGVSEEEFYDCLRF

Query:  NVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLKL-
        NVNRLNILQLGLTLA+QNGNVAMTWEFNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLKL 
Subjt:  NVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLKL-

Query:  ---HIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAF
           +IPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAF
Subjt:  ---HIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAF

Query:  RPIVKIVDPSAMTPPPPRLPTLCFGSFPPFFI
        +PIVKIVDPSAMTPPPPRLPTLCFGSFPPFFI
Subjt:  RPIVKIVDPSAMTPPPPRLPTLCFGSFPPFFI

XP_022928830.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]5.1e-10168.42Show/hide
Query:  REVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGVSSLDSF
        REVWS+NL +E+E++  YL EFPIVAIDTEFPGFLR+TPKGVS+EEFY CL+FNVNRL+ILQLGLTL D NG + MTWEFNF+DFD IS+MEGV SLDSF
Subjt:  REVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGVSSLDSF

Query:  LKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLK----LHIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLA
        LKNKGF+F KL+  GIA ++F+  F P+ RSGRI++WITFHG YDIAYL+K    + +P SM+ FA  A HLLGTV+DLKHM RY D L +G+LGLKKLA
Subjt:  LKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLK----LHIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLA

Query:  KLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMT
        KLL + R+G AHFAGSDSLLTA+VY KMK + KV  +  EGFLYGLP+ IQ +RP V IVDPS +T
Subjt:  KLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMT

XP_023550519.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]3.3e-10068.8Show/hide
Query:  REVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGVSSLDSF
        REVWSYNL +E+E++  YL EFPIVA+DTEFPGFLR+TPKGVS+EEFY CL+FNVNRL+ILQLGLTL D+NG + MTWEFNF+DFD IS+MEGV SLDSF
Subjt:  REVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGVSSLDSF

Query:  LKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLK----LHIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLA
        LKNKGF+F KL+  GIA E+F+  F P+ RS RI+RWITFHG YDIAYL+K    + +P SM+ FA  A HLLGTV+DLKHM RY D L +G+LGLKKLA
Subjt:  LKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLK----LHIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLA

Query:  KLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMT
        KLL + RIG AHFAGSDSLLTA+VY KMK + KV  +  EGFLYGLP+ IQ +R  V IVDPS +T
Subjt:  KLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMT

TrEMBL top hitse value%identityAlignment
A0A6J1CXZ5 Poly(A)-specific ribonuclease1.0e-13175Show/hide
Query:  NENTFKVKNSPESMEKTF-GKSPTAPRSVHQNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLA
        N+N F+V  S E+MEK    KS  APRS+  NREVWS NL +ELE+LNEYLPEFP+V ID EFPGFL  TPKG+SEEEFY CLRFNVNRLNILQLGLTLA
Subjt:  NENTFKVKNSPESMEKTF-GKSPTAPRSVHQNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLA

Query:  DQNGNVAMTWEFNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLKL----HIPISMATFAAT
        DQ GN+AMTWEFNFRDFDH+SDME VSSLDSFLKNKGFDFYKLK+ GIA EDFTTLFLPICRSG+I+RWITFHGFYDI YLLKL     IPISMATFA T
Subjt:  DQNGNVAMTWEFNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLKL----HIPISMATFAAT

Query:  AQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMTPP
        AQHLLGTVSDLKHM RYCDGLLDG+LGLKKLAKLLDVKRI  AHFA SD+L T +VYTKMKQ+FK+P+EQ EGFLYGLP+ I  F+ + KI+DPS MTPP
Subjt:  AQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMTPP

Query:  PP---RLPTLCFGSFPPFFI
        PP   +   L F S  P  +
Subjt:  PP---RLPTLCFGSFPPFFI

A0A6J1DIB1 putative CCR4-associated factor 1 homolog 83.5e-10368.86Show/hide
Query:  MEKTFGKSPTAPRSVHQNREVWSYNLPKELEILNEYLPEFPIVAIDTEF---PGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWE
        MEKT   S  APRSV + +EVWS+NL +ELE+LNEY+PEF +V ID  +      LR +P               + RLNILQLGLTL DQ  NVAMT E
Subjt:  MEKTFGKSPTAPRSVHQNREVWSYNLPKELEILNEYLPEFPIVAIDTEF---PGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWE

Query:  FNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLK----LHIPISMATFAATAQHLLGTVSDL
        FNFRDFDHISDM+G+S LD FLKN GFDFYKLK+DGI  E+FTTLFLPIC SGRIER ITFHGFY+IAYLLK      IPI MATFAATAQHLLG +S+L
Subjt:  FNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLK----LHIPISMATFAATAQHLLGTVSDL

Query:  KHMCRYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMTPP
        KHM RYCDGLLDG+L LKK AKLLDVKRIG AHFAG DSLLTA++YTKMKQMFK+P+EQ EGFLY LPHRI+AF  I+KI++PSA TPP
Subjt:  KHMCRYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMTPP

A0A6J1DLA5 Poly(A)-specific ribonuclease1.2e-16488.86Show/hide
Query:  MEKTFGKSPTAPRSVHQNREVWSYNLPKELEILNEYLPEFPIVAIDTEF-----------------------------PGFLRYTPKGVSEEEFYDCLRF
        MEKTFGKSPTAPRSVHQNREVWSYNL KELEILNEYLPEFPIVAIDTEF                             PGFLRYTPKGVSEEEFYDCLRF
Subjt:  MEKTFGKSPTAPRSVHQNREVWSYNLPKELEILNEYLPEFPIVAIDTEF-----------------------------PGFLRYTPKGVSEEEFYDCLRF

Query:  NVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLKL-
        NVNRLNILQLGLTLA+QNGNVAMTWEFNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLKL 
Subjt:  NVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLKL-

Query:  ---HIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAF
           +IPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAF
Subjt:  ---HIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAF

Query:  RPIVKIVDPSAMTPPPPRLPTLCFGSFPPFFI
        +PIVKIVDPSAMTPPPPRLPTLCFGSFPPFFI
Subjt:  RPIVKIVDPSAMTPPPPRLPTLCFGSFPPFFI

A0A6J1ESM7 Poly(A)-specific ribonuclease2.5e-10168.42Show/hide
Query:  REVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGVSSLDSF
        REVWS+NL +E+E++  YL EFPIVAIDTEFPGFLR+TPKGVS+EEFY CL+FNVNRL+ILQLGLTL D NG + MTWEFNF+DFD IS+MEGV SLDSF
Subjt:  REVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGVSSLDSF

Query:  LKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLK----LHIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLA
        LKNKGF+F KL+  GIA ++F+  F P+ RSGRI++WITFHG YDIAYL+K    + +P SM+ FA  A HLLGTV+DLKHM RY D L +G+LGLKKLA
Subjt:  LKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLK----LHIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLA

Query:  KLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMT
        KLL + R+G AHFAGSDSLLTA+VY KMK + KV  +  EGFLYGLP+ IQ +RP V IVDPS +T
Subjt:  KLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMT

A0A6J1HL76 Poly(A)-specific ribonuclease2.8e-9768.8Show/hide
Query:  REVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGVSSLDSF
        R+VWS+NL +E+E++ + L EFPIVAIDTEFPGFLR+TPKGVS+EEFY+CL+FNVNRL+ILQLGLTL + NG + MTWEFNFRDFD IS+MEGV SLDSF
Subjt:  REVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGVSSLDSF

Query:  LKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLKLH----IPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLA
        LKNKGF+F  L+  GIA E+F T F PI RSGRI RWITFHG YDIAYL+K      +P SM+ FA TA H+LGTV+DLKHM  Y   LLDG+LGLKKLA
Subjt:  LKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLKLH----IPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDGDLGLKKLA

Query:  KLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMT
        KLL V R G AHFAGSDSLLTA+VY KMK + KV     EGFLYGLP+ IQ +R  V IVDPS +T
Subjt:  KLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMT

SwissProt top hitse value%identityAlignment
O64773 Probable CCR4-associated factor 1 homolog 52.0e-3941.3Show/hide
Query:  EVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGVSSLDSFL
        EVW +N   E+  + + L     +AIDTEFPG L+ TP   S+E  Y  ++FNV+  +++QLGLTL  +   +  TWE N  DF+    ++   S+ +FL
Subjt:  EVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGVSSLDSFL

Query:  KNKGFDFYKLKRDGIALEDFTTLFLPIC--RSGRIERWITFHGFYDIAYLLK----LHIPISMATFAATAQHLLGT-VSDLKHMCRYCDGLLDGDLGLKK
        KN G D  K++ +GI +E+F   F  I   + G++ RW+TF G YD AYLLK      +P +   F  T Q LLG  V D+K M   C G L    GL++
Subjt:  KNKGFDFYKLKRDGIALEDFTTLFLPIC--RSGRIERWITFHGFYDIAYLLK----LHIPISMATFAATAQHLLGT-VSDLKHMCRYCDGLLDGDLGLKK

Query:  LAKLLDVKRIGIAHFAGSDSLLTAAVYTKM
        +A +L ++R+G AH AGSDS LTA V+TK+
Subjt:  LAKLLDVKRIGIAHFAGSDSLLTAAVYTKM

Q9S9P2 Probable CCR4-associated factor 1 homolog 25.6e-4238.26Show/hide
Query:  REVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYT--------PKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNV-------AMTWEFNFRDF
        REVW++NL +E+ ++ + + +FP VA+DTEFPG +  T        P  +  E  YD L+ NVN L ++QLGLTL+D+ GN+          W+FNFR+F
Subjt:  REVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYT--------PKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNV-------AMTWEFNFRDF

Query:  DHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFL--PICRSGRIERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMC
        + ISDM  + S++  L+    D  K    G+  + F  L +   +  + +I  W+TFH  YD  YLLKL     +P  ++ F    +     V D+K++ 
Subjt:  DHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFL--PICRSGRIERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMC

Query:  RYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL
         +C  L     GL+K+A+LL VKR+GI+H AGSDSLLT   + KMK+ F    + +  GFL+GL
Subjt:  RYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL

Q9SAI2 Probable CCR4-associated factor 1 homolog 61.3e-4340.3Show/hide
Query:  QNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGV---SEEEFYDCLRFNVNRLNILQLGLTLADQNGNVA-------MTWEFNFRDFDHI
        Q REVW+ NL +E++++ + + +FP VA+DTEFPG +   P G    + +  Y+ L+ NVN L ++QLGLT +++ GN+          W+FNFR+FD  
Subjt:  QNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGV---SEEEFYDCLRFNVNRLNILQLGLTLADQNGNVA-------MTWEFNFRDFDHI

Query:  SDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRI----ERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMCR
        SD+  + S++  LK  G D  K   DGI  + F  L +    SG +      W+TFH  YD  YLLKL    ++P S   F         TV D+KH+ +
Subjt:  SDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRI----ERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMCR

Query:  YCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL
        +C+ L     GL KLA+LL+V+R+GI H AGSDSLLT+  + K+K+ F V P+ +  G LYGL
Subjt:  YCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL

Q9SHJ0 Probable CCR4-associated factor 1 homolog 17.6e-3934.01Show/hide
Query:  VHQ--NREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGV
        +HQ   R VW  N+ +E+  + E L  FP++A DTE+PG +  T    S +E Y  ++ NV    ++Q G TL +  G +   WE NF +F   SD    
Subjt:  VHQ--NREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAMTWEFNFRDFDHISDMEGV

Query:  SSLDSFLKNKGFDFYKLKRDGIAL--EDFTTLFLPICRSGRIERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDG
         S++ FL+  G D  K++ +G+ +    F    + + RS +   ++TF G YD AY L +     +P +   FA     + G V D K M  +C+GL + 
Subjt:  SSLDSFLKNKGFDFYKLKRDGIAL--EDFTTLFLPICRSGRIERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMCRYCDGLLDG

Query:  DLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMTPPPPRLPTLC---FGSFPPF
         LGL KLA+LL + R+G AH AGSDSL+TA V+ K+K +++     R G +YG+            +  P+    P P LP +C     S+P F
Subjt:  DLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMTPPPPRLPTLC---FGSFPPF

Q9SKZ2 Probable CCR4-associated factor 1 homolog 71.9e-4239.77Show/hide
Query:  QNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKG---VSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVA--------MTWEFNFRDFDH
        Q REVW+ NL  E+ ++ E + +FP VA+DTEFPG +   P G    + E  Y+ L+ NVN L ++QLGLT +D+ GN+           W+FNFR+FD 
Subjt:  QNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKG---VSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVA--------MTWEFNFRDFDH

Query:  ISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRI----ERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMC
         SD+    S++  L+  G DF K    GI  + F  L +    SG +      W+TFH  YD  YLLKL    ++P +   F          V D+KH+ 
Subjt:  ISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRI----ERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMC

Query:  RYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL
        ++C+ L     GL KLA+LLDV+R+GI H AGSDSLLT+  + K+++ F +  +E+  G LYGL
Subjt:  RYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL

Arabidopsis top hitse value%identityAlignment
AT1G15920.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.0e-4338.26Show/hide
Query:  REVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYT--------PKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNV-------AMTWEFNFRDF
        REVW++NL +E+ ++ + + +FP VA+DTEFPG +  T        P  +  E  YD L+ NVN L ++QLGLTL+D+ GN+          W+FNFR+F
Subjt:  REVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYT--------PKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNV-------AMTWEFNFRDF

Query:  DHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFL--PICRSGRIERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMC
        + ISDM  + S++  L+    D  K    G+  + F  L +   +  + +I  W+TFH  YD  YLLKL     +P  ++ F    +     V D+K++ 
Subjt:  DHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFL--PICRSGRIERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMC

Query:  RYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL
         +C  L     GL+K+A+LL VKR+GI+H AGSDSLLT   + KMK+ F    + +  GFL+GL
Subjt:  RYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL

AT1G80780.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.5e-4540.3Show/hide
Query:  QNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGV---SEEEFYDCLRFNVNRLNILQLGLTLADQNGNVA-------MTWEFNFRDFDHI
        Q REVW+ NL +E++++ + + +FP VA+DTEFPG +   P G    + +  Y+ L+ NVN L ++QLGLT +++ GN+          W+FNFR+FD  
Subjt:  QNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGV---SEEEFYDCLRFNVNRLNILQLGLTLADQNGNVA-------MTWEFNFRDFDHI

Query:  SDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRI----ERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMCR
        SD+  + S++  LK  G D  K   DGI  + F  L +    SG +      W+TFH  YD  YLLKL    ++P S   F         TV D+KH+ +
Subjt:  SDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRI----ERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMCR

Query:  YCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL
        +C+ L     GL KLA+LL+V+R+GI H AGSDSLLT+  + K+K+ F V P+ +  G LYGL
Subjt:  YCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL

AT1G80780.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.5e-4540.3Show/hide
Query:  QNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGV---SEEEFYDCLRFNVNRLNILQLGLTLADQNGNVA-------MTWEFNFRDFDHI
        Q REVW+ NL +E++++ + + +FP VA+DTEFPG +   P G    + +  Y+ L+ NVN L ++QLGLT +++ GN+          W+FNFR+FD  
Subjt:  QNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGV---SEEEFYDCLRFNVNRLNILQLGLTLADQNGNVA-------MTWEFNFRDFDHI

Query:  SDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRI----ERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMCR
        SD+  + S++  LK  G D  K   DGI  + F  L +    SG +      W+TFH  YD  YLLKL    ++P S   F         TV D+KH+ +
Subjt:  SDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRI----ERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMCR

Query:  YCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL
        +C+ L     GL KLA+LL+V+R+GI H AGSDSLLT+  + K+K+ F V P+ +  G LYGL
Subjt:  YCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL

AT1G80780.3 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.5e-4540.3Show/hide
Query:  QNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGV---SEEEFYDCLRFNVNRLNILQLGLTLADQNGNVA-------MTWEFNFRDFDHI
        Q REVW+ NL +E++++ + + +FP VA+DTEFPG +   P G    + +  Y+ L+ NVN L ++QLGLT +++ GN+          W+FNFR+FD  
Subjt:  QNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGV---SEEEFYDCLRFNVNRLNILQLGLTLADQNGNVA-------MTWEFNFRDFDHI

Query:  SDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRI----ERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMCR
        SD+  + S++  LK  G D  K   DGI  + F  L +    SG +      W+TFH  YD  YLLKL    ++P S   F         TV D+KH+ +
Subjt:  SDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRI----ERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMCR

Query:  YCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL
        +C+ L     GL KLA+LL+V+R+GI H AGSDSLLT+  + K+K+ F V P+ +  G LYGL
Subjt:  YCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL

AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-4339.77Show/hide
Query:  QNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKG---VSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVA--------MTWEFNFRDFDH
        Q REVW+ NL  E+ ++ E + +FP VA+DTEFPG +   P G    + E  Y+ L+ NVN L ++QLGLT +D+ GN+           W+FNFR+FD 
Subjt:  QNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKG---VSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVA--------MTWEFNFRDFDH

Query:  ISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRI----ERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMC
         SD+    S++  L+  G DF K    GI  + F  L +    SG +      W+TFH  YD  YLLKL    ++P +   F          V D+KH+ 
Subjt:  ISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRI----ERWITFHGFYDIAYLLKL----HIPISMATFAATAQHLLGTVSDLKHMC

Query:  RYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL
        ++C+ L     GL KLA+LLDV+R+GI H AGSDSLLT+  + K+++ F +  +E+  G LYGL
Subjt:  RYCDGLLDGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKV-PVEQREGFLYGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATCAAACCAACGAAAATACATTTAAAGTGAAGAATTCACCAGAAAGCATGGAAAAGACATTCGGAAAGTCTCCGACAGCTCCAAGATCCGTCCACCAGAATCGAGAGGT
TTGGTCTTACAATCTACCCAAAGAGTTAGAGATTCTGAATGAGTATCTTCCAGAGTTTCCAATAGTCGCCATTGATACAGAGTTTCCAGGATTTCTCCGGTACACTCCGA
AAGGTGTTTCGGAGGAAGAATTCTACGATTGTCTCCGATTTAATGTGAACCGATTGAACATACTCCAACTCGGTCTCACACTCGCAGATCAAAATGGAAATGTAGCGATG
ACTTGGGAGTTTAATTTCAGAGATTTTGATCACATTAGCGACATGGAAGGCGTTTCTTCACTGGACTCGTTTCTTAAGAACAAGGGGTTCGATTTCTACAAATTGAAGAG
AGACGGAATAGCTCTAGAAGATTTCACTACCCTATTTCTACCGATTTGTCGTAGTGGTAGAATCGAGAGATGGATTACATTTCATGGCTTCTACGACATCGCTTATTTAC
TGAAGCTGCACATACCAATTTCTATGGCAACGTTTGCGGCTACTGCTCAACATTTATTAGGTACTGTCAGCGATTTGAAGCATATGTGTCGCTATTGTGACGGATTGCTC
GACGGCGACCTAGGACTAAAAAAATTGGCCAAGCTGCTCGATGTAAAACGAATAGGCATAGCACATTTTGCCGGTTCCGATAGTTTGCTCACTGCTGCAGTATACACAAA
GATGAAGCAAATGTTCAAGGTTCCGGTAGAGCAACGTGAAGGGTTTCTCTACGGCTTGCCTCACCGGATTCAAGCTTTTCGGCCAATCGTGAAGATAGTTGATCCGTCTG
CCATGACTCCTCCTCCTCCACGTCTGCCAACATTGTGTTTTGGTAGCTTTCCGCCGTTTTTCATT
mRNA sequenceShow/hide mRNA sequence
TATCAAACCAACGAAAATACATTTAAAGTGAAGAATTCACCAGAAAGCATGGAAAAGACATTCGGAAAGTCTCCGACAGCTCCAAGATCCGTCCACCAGAATCGAGAGGT
TTGGTCTTACAATCTACCCAAAGAGTTAGAGATTCTGAATGAGTATCTTCCAGAGTTTCCAATAGTCGCCATTGATACAGAGTTTCCAGGATTTCTCCGGTACACTCCGA
AAGGTGTTTCGGAGGAAGAATTCTACGATTGTCTCCGATTTAATGTGAACCGATTGAACATACTCCAACTCGGTCTCACACTCGCAGATCAAAATGGAAATGTAGCGATG
ACTTGGGAGTTTAATTTCAGAGATTTTGATCACATTAGCGACATGGAAGGCGTTTCTTCACTGGACTCGTTTCTTAAGAACAAGGGGTTCGATTTCTACAAATTGAAGAG
AGACGGAATAGCTCTAGAAGATTTCACTACCCTATTTCTACCGATTTGTCGTAGTGGTAGAATCGAGAGATGGATTACATTTCATGGCTTCTACGACATCGCTTATTTAC
TGAAGCTGCACATACCAATTTCTATGGCAACGTTTGCGGCTACTGCTCAACATTTATTAGGTACTGTCAGCGATTTGAAGCATATGTGTCGCTATTGTGACGGATTGCTC
GACGGCGACCTAGGACTAAAAAAATTGGCCAAGCTGCTCGATGTAAAACGAATAGGCATAGCACATTTTGCCGGTTCCGATAGTTTGCTCACTGCTGCAGTATACACAAA
GATGAAGCAAATGTTCAAGGTTCCGGTAGAGCAACGTGAAGGGTTTCTCTACGGCTTGCCTCACCGGATTCAAGCTTTTCGGCCAATCGTGAAGATAGTTGATCCGTCTG
CCATGACTCCTCCTCCTCCACGTCTGCCAACATTGTGTTTTGGTAGCTTTCCGCCGTTTTTCATT
Protein sequenceShow/hide protein sequence
YQTNENTFKVKNSPESMEKTFGKSPTAPRSVHQNREVWSYNLPKELEILNEYLPEFPIVAIDTEFPGFLRYTPKGVSEEEFYDCLRFNVNRLNILQLGLTLADQNGNVAM
TWEFNFRDFDHISDMEGVSSLDSFLKNKGFDFYKLKRDGIALEDFTTLFLPICRSGRIERWITFHGFYDIAYLLKLHIPISMATFAATAQHLLGTVSDLKHMCRYCDGLL
DGDLGLKKLAKLLDVKRIGIAHFAGSDSLLTAAVYTKMKQMFKVPVEQREGFLYGLPHRIQAFRPIVKIVDPSAMTPPPPRLPTLCFGSFPPFFI