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MS007065 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007065
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold430:271464..271715
RNA-Seq ExpressionMS007065
SyntenyMS007065
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON87133.1 Ribonuclease H-like domain containing protein [Trema orientale]1.1e-0540Show/hide
Query:  KLNIDAACGANL--TGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETL
        KLN+DAA  A +  TG+G ++RD +G +V AG   +P L+ PL AELL +REGL+     G     ++S+   AV L+   ++ L
Subjt:  KLNIDAACGANL--TGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETL

XP_018832574.2 uncharacterized protein LOC109000195 [Juglans regia]6.3e-0641.18Show/hide
Query:  KLNIDAACGANL--TGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETL
        KLN+D A  A++  +G+G V+RDE+G +V A ++    +  P   ELL +  GL F +SLG   L VES+CL  V  L+   E+L
Subjt:  KLNIDAACGANL--TGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETL

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]1.8e-0845.24Show/hide
Query:  KLNIDAACGANLTGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLG
        K+N DAAC +  TGLG +IRD  G L+ A S  LP+   PL AE+  I E L  A S  ++ L VES+C  A+ L++G L ++G
Subjt:  KLNIDAACGANLTGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLG

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.7e-0948.81Show/hide
Query:  KLNIDAACGANLTGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLG
        KLN DAAC    T  G +IRD S  LVAA S  +P   +PLLAE+  I EGL FA +  F++L VES+ L A+ L+R  + T G
Subjt:  KLNIDAACGANLTGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLG

XP_038698005.1 uncharacterized protein LOC119995563 [Tripterygium wilfordii]1.4e-0542.31Show/hide
Query:  KLNIDAACGA--NLTGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLL
        K+N DAA  +  N+TGLG +IRD  G  +AA + S P+ + PLLAE +     +LFA  LGFS + +E + LT ++ +
Subjt:  KLNIDAACGA--NLTGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLL

TrEMBL top hitse value%identityAlignment
A0A2I4FLN6 uncharacterized protein LOC1090001953.0e-0641.18Show/hide
Query:  KLNIDAACGANL--TGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETL
        KLN+D A  A++  +G+G V+RDE+G +V A ++    +  P   ELL +  GL F +SLG   L VES+CL  V  L+   E+L
Subjt:  KLNIDAACGANL--TGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETL

A0A2P5AIW9 Ribonuclease H-like domain containing protein8.9e-0647.44Show/hide
Query:  KLNIDAACGANL--TGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLL
        K+NIDAA   NL   G G VI+D+ G  V A +R +P  + P  AEL+ IREGL FA   GF    VESN L    +L
Subjt:  KLNIDAACGANL--TGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLL

A0A2P5ENL3 Ribonuclease H-like domain containing protein5.2e-0640Show/hide
Query:  KLNIDAACGANL--TGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETL
        KLN+DAA  A +  TG+G ++RD +G +V AG   +P L+ PL AELL +REGL+     G     ++S+   AV L+   ++ L
Subjt:  KLNIDAACGANL--TGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETL

A0A6J1BQ49 uncharacterized protein LOC1110047868.6e-0945.24Show/hide
Query:  KLNIDAACGANLTGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLG
        K+N DAAC +  TGLG +IRD  G L+ A S  LP+   PL AE+  I E L  A S  ++ L VES+C  A+ L++G L ++G
Subjt:  KLNIDAACGANLTGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLG

A0A6J1DX30 uncharacterized protein LOC1110248742.3e-0948.81Show/hide
Query:  KLNIDAACGANLTGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLG
        KLN DAAC    T  G +IRD S  LVAA S  +P   +PLLAE+  I EGL FA +  F++L VES+ L A+ L+R  + T G
Subjt:  KLNIDAACGANLTGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAATTGAACATTGATGCTGCGTGTGGAGCGAATTTGACGGGATTGGGGTTTGTTATTAGGGATGAATCCGGTCATTTAGTGGCAGCAGGGAGTCGGTCGCTTCCTCTTCT
GTACGCCCCTTTACTTGCTGAGCTCTTAGACATCCGGGAAGGTCTCCTCTTTGCAATTTCACTGGGTTTTTCGTATCTTACAGTCGAGTCCAATTGTCTCACCGCAGTAT
CCCTTCTTCGTGGCGGTTTGGAAACCCTCGGA
mRNA sequenceShow/hide mRNA sequence
AAATTGAACATTGATGCTGCGTGTGGAGCGAATTTGACGGGATTGGGGTTTGTTATTAGGGATGAATCCGGTCATTTAGTGGCAGCAGGGAGTCGGTCGCTTCCTCTTCT
GTACGCCCCTTTACTTGCTGAGCTCTTAGACATCCGGGAAGGTCTCCTCTTTGCAATTTCACTGGGTTTTTCGTATCTTACAGTCGAGTCCAATTGTCTCACCGCAGTAT
CCCTTCTTCGTGGCGGTTTGGAAACCCTCGGA
Protein sequenceShow/hide protein sequence
KLNIDAACGANLTGLGFVIRDESGHLVAAGSRSLPLLYAPLLAELLDIREGLLFAISLGFSYLTVESNCLTAVSLLRGGLETLG