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MS007080 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007080
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationscaffold305:82543..82841
RNA-Seq ExpressionMS007080
SyntenyMS007080
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054462.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]5.5e-1753.77Show/hide
Query:  VLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVL-THLAAAAGATTTSVIANNSDIT---TRTATTD-----------KFEKDNKTVCGHLLNHMNDS
        +LP+LSKLEPLDG+NY+ WSQKLLIFF+QL+VD VL T L ++   TTTS  +N    T   T  A TD           K+ KDNKTV GHLLNHM+D 
Subjt:  VLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVL-THLAAAAGATTTSVIANNSDIT---TRTATTD-----------KFEKDNKTVCGHLLNHMNDS

Query:  LFDMLI
        +FD+ +
Subjt:  LFDMLI

XP_008456453.1 PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo]5.5e-1753.77Show/hide
Query:  VLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVL-THLAAAAGATTTSVIANNSDIT---TRTATTD-----------KFEKDNKTVCGHLLNHMNDS
        +LP+LSKLEPLDG+NY+ WSQKLLIFF+QL+VD VL T L ++   TTTS  +N    T   T  A TD           K+ KDNKTV GHLLNHM+D 
Subjt:  VLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVL-THLAAAAGATTTSVIANNSDIT---TRTATTD-----------KFEKDNKTVCGHLLNHMNDS

Query:  LFDMLI
        +FD+ +
Subjt:  LFDMLI

XP_016471390.1 PREDICTED: uncharacterized protein LOC107793528 [Nicotiana tabacum]1.7e-1856.38Show/hide
Query:  LPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVLTHLAAAAGATTTSVIANNSDITTR----TATTDKFEKDNKTVCGHLLNHMNDSLFDMLI
        LP+LSKLEPLDG+NY+CWS KLL+FF+QL+VD VL +   A   + T+ +A++S+IT       A   KFEKDNKT+ GHLLNHM ++LFD+ I
Subjt:  LPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVLTHLAAAAGATTTSVIANNSDITTR----TATTDKFEKDNKTVCGHLLNHMNDSLFDMLI

XP_022150382.1 uncharacterized protein LOC111018559 [Momordica charantia]3.4e-1950.83Show/hide
Query:  ASVRYGMVLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVLTHLAAAAGATTTSVIAN---------------------NSDITTRTATTDKFEKDNK
        ASVR G VLP+ SKLE LDGSNY  WSQKL IFF+QL+VD VLT  AA   A   +V  N                      +  TT  A  DKF+KDNK
Subjt:  ASVRYGMVLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVLTHLAAAAGATTTSVIAN---------------------NSDITTRTATTDKFEKDNK

Query:  TVCGHLLNHMNDSLFDMLIT
        T+  HLLNHMN+SLFD  +T
Subjt:  TVCGHLLNHMNDSLFDMLIT

XP_022158735.1 uncharacterized protein LOC111025197 [Momordica charantia]1.5e-1949.6Show/hide
Query:  ASVRYGMVLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVLTHLAAAA---GATTTSVIANNSDITTRTAT------------------------TDK
        A++R G VL +LSKLEPLDGSNY+ WSQKLLIFF+QL++D ++T    AA    ATTT+  A  +   T   T                         DK
Subjt:  ASVRYGMVLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVLTHLAAAA---GATTTSVIANNSDITTRTAT------------------------TDK

Query:  FEKDNKTVCGHLLNHMNDSLFDMLI
        FEKDNKTV GHLLNHMNDSLFD+ +
Subjt:  FEKDNKTVCGHLLNHMNDSLFDMLI

TrEMBL top hitse value%identityAlignment
A0A1S3C3Z1 uncharacterized protein LOC1034963962.7e-1753.77Show/hide
Query:  VLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVL-THLAAAAGATTTSVIANNSDIT---TRTATTD-----------KFEKDNKTVCGHLLNHMNDS
        +LP+LSKLEPLDG+NY+ WSQKLLIFF+QL+VD VL T L ++   TTTS  +N    T   T  A TD           K+ KDNKTV GHLLNHM+D 
Subjt:  VLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVL-THLAAAAGATTTSVIANNSDIT---TRTATTD-----------KFEKDNKTVCGHLLNHMNDS

Query:  LFDMLI
        +FD+ +
Subjt:  LFDMLI

A0A1S4A453 uncharacterized protein LOC1077935288.2e-1956.38Show/hide
Query:  LPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVLTHLAAAAGATTTSVIANNSDITTR----TATTDKFEKDNKTVCGHLLNHMNDSLFDMLI
        LP+LSKLEPLDG+NY+CWS KLL+FF+QL+VD VL +   A   + T+ +A++S+IT       A   KFEKDNKT+ GHLLNHM ++LFD+ I
Subjt:  LPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVLTHLAAAAGATTTSVIANNSDITTR----TATTDKFEKDNKTVCGHLLNHMNDSLFDMLI

A0A5A7UFB4 Ty1-copia retrotransposon protein2.7e-1753.77Show/hide
Query:  VLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVL-THLAAAAGATTTSVIANNSDIT---TRTATTD-----------KFEKDNKTVCGHLLNHMNDS
        +LP+LSKLEPLDG+NY+ WSQKLLIFF+QL+VD VL T L ++   TTTS  +N    T   T  A TD           K+ KDNKTV GHLLNHM+D 
Subjt:  VLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVL-THLAAAAGATTTSVIANNSDIT---TRTATTD-----------KFEKDNKTVCGHLLNHMNDS

Query:  LFDMLI
        +FD+ +
Subjt:  LFDMLI

A0A6J1DAK7 uncharacterized protein LOC1110185591.7e-1950.83Show/hide
Query:  ASVRYGMVLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVLTHLAAAAGATTTSVIAN---------------------NSDITTRTATTDKFEKDNK
        ASVR G VLP+ SKLE LDGSNY  WSQKL IFF+QL+VD VLT  AA   A   +V  N                      +  TT  A  DKF+KDNK
Subjt:  ASVRYGMVLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVLTHLAAAAGATTTSVIAN---------------------NSDITTRTATTDKFEKDNK

Query:  TVCGHLLNHMNDSLFDMLIT
        T+  HLLNHMN+SLFD  +T
Subjt:  TVCGHLLNHMNDSLFDMLIT

A0A6J1DWN1 uncharacterized protein LOC1110251977.5e-2049.6Show/hide
Query:  ASVRYGMVLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVLTHLAAAA---GATTTSVIANNSDITTRTAT------------------------TDK
        A++R G VL +LSKLEPLDGSNY+ WSQKLLIFF+QL++D ++T    AA    ATTT+  A  +   T   T                         DK
Subjt:  ASVRYGMVLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVLTHLAAAA---GATTTSVIANNSDITTRTAT------------------------TDK

Query:  FEKDNKTVCGHLLNHMNDSLFDMLI
        FEKDNKTV GHLLNHMNDSLFD+ +
Subjt:  FEKDNKTVCGHLLNHMNDSLFDMLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTTCAGTTAGATATGGCATGGTACTTCCAAATCTATCCAAACTCGAACCATTAGATGGATCGAATTACCAATGCTGGTCTCAGAAGCTGCTCATCTTCTTCAAGCAATT
GGACGTAGACAACGTTCTGACCCACCTAGCTGCTGCCGCTGGAGCCACCACCACCAGTGTCATCGCCAACAACTCCGACATCACCACTCGAACCGCCACCACCGATAAGT
TCGAGAAAGATAACAAGACTGTCTGTGGGCATCTCCTTAACCATATGAATGACTCGCTATTTGATATGTTAATTACC
mRNA sequenceShow/hide mRNA sequence
GCTTCAGTTAGATATGGCATGGTACTTCCAAATCTATCCAAACTCGAACCATTAGATGGATCGAATTACCAATGCTGGTCTCAGAAGCTGCTCATCTTCTTCAAGCAATT
GGACGTAGACAACGTTCTGACCCACCTAGCTGCTGCCGCTGGAGCCACCACCACCAGTGTCATCGCCAACAACTCCGACATCACCACTCGAACCGCCACCACCGATAAGT
TCGAGAAAGATAACAAGACTGTCTGTGGGCATCTCCTTAACCATATGAATGACTCGCTATTTGATATGTTAATTACC
Protein sequenceShow/hide protein sequence
ASVRYGMVLPNLSKLEPLDGSNYQCWSQKLLIFFKQLDVDNVLTHLAAAAGATTTSVIANNSDITTRTATTDKFEKDNKTVCGHLLNHMNDSLFDMLIT