CuGenDBv2

Gene ID	MS007110
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNA-binding KH domain-containing protein PEPPER
Genome location	scaffold25:372937..373134
RNA-Seq Expression	MS007110
Synteny	MS007110
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0009299 - mRNA transcription (biological process) GO:0010468 - regulation of gene expression (biological process) GO:0048467 - gynoecium development (biological process) GO:0048577 - negative regulation of short-day photoperiodism, flowering (biological process) GO:0048579 - negative regulation of long-day photoperiodism, flowering (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0003729 - mRNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_016901887.1 PREDICTED: RNA-binding KH domain-containing protein PEPPER [Cucumis melo]

6.9e-16

85.07

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Query:  EAVSGPKEPVTSSSYGRLD-AGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL
        EAV+ PKEPVTSSSYGRLD  GLRSSYSQLA SGSSY    TSSSLSSQSYGGYGSSGLGGY+TFRL
Subjt:  EAVSGPKEPVTSSSYGRLD-AGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL

XP_022149911.1 RNA-binding KH domain-containing protein PEPPER [Momordica charantia]

2.0e-23

100

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Query:  EAVSGPKEPVTSSSYGRLDAGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL
        EAVSGPKEPVTSSSYGRLDAGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL
Subjt:  EAVSGPKEPVTSSSYGRLDAGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL

XP_022938096.1 RNA-binding KH domain-containing protein PEPPER-like [Cucurbita moschata]

4.0e-16

85.07

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Query:  EAVSGPKEPVTSSSYGRLD-AGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL
        EA+SGPKEPVTSSSYGRLD  GLRSSYSQL  SGSSY    T SSLSSQSYGGYGSSGLGGYSTFRL
Subjt:  EAVSGPKEPVTSSSYGRLD-AGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL

XP_023538336.1 RNA-binding KH domain-containing protein PEPPER-like [Cucurbita pepo subsp. pepo]

4.0e-16

85.07

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Query:  EAVSGPKEPVTSSSYGRLD-AGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL
        EA+SGPKEPVTSSSYGRLD  GLRSSYSQL  SGSSY    T SSLSSQSYGGYGSSGLGGYSTFRL
Subjt:  EAVSGPKEPVTSSSYGRLD-AGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL

XP_038890982.1 RNA-binding KH domain-containing protein PEPPER-like [Benincasa hispida]

4.8e-17

89.55

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Query:  EAVSGPKEPVTSSSYGRLDA-GLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL
        EAVS PKEPVTSSSYGRLDA GLRSSYSQLA SGSSY    TSSSLSSQSYGGYGSSGLGGYSTFRL
Subjt:  EAVSGPKEPVTSSSYGRLDA-GLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E0X0 RNA-binding KH domain-containing protein PEPPER

3.3e-16

85.07

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Query:  EAVSGPKEPVTSSSYGRLD-AGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL
        EAV+ PKEPVTSSSYGRLD  GLRSSYSQLA SGSSY    TSSSLSSQSYGGYGSSGLGGY+TFRL
Subjt:  EAVSGPKEPVTSSSYGRLD-AGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL

A0A5D3BVI2 RNA-binding KH domain-containing protein PEPPER

3.3e-16

85.07

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Query:  EAVSGPKEPVTSSSYGRLD-AGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL
        EAV+ PKEPVTSSSYGRLD  GLRSSYSQLA SGSSY    TSSSLSSQSYGGYGSSGLGGY+TFRL
Subjt:  EAVSGPKEPVTSSSYGRLD-AGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL

A0A6J1D9V1 RNA-binding KH domain-containing protein PEPPER

9.7e-24

100

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Query:  EAVSGPKEPVTSSSYGRLDAGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL
        EAVSGPKEPVTSSSYGRLDAGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL
Subjt:  EAVSGPKEPVTSSSYGRLDAGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL

A0A6J1FC72 RNA-binding KH domain-containing protein PEPPER-like

2.0e-16

85.07

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Query:  EAVSGPKEPVTSSSYGRLD-AGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL
        EA+SGPKEPVTSSSYGRLD  GLRSSYSQL  SGSSY    T SSLSSQSYGGYGSSGLGGYSTFRL
Subjt:  EAVSGPKEPVTSSSYGRLD-AGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL

A0A6J1HR76 RNA-binding KH domain-containing protein PEPPER-like

4.4e-16

85.07

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Query:  EAVSGPKEPVTSSSYGRLD-AGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL
        EA+SGPKEPVT+SSYGRLD AGLRSSYSQL  SGSSY    TSSSLSSQSYGGY SSGLGGYSTFRL
Subjt:  EAVSGPKEPVTSSSYGRLD-AGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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GAAGCAGTAAGTGGGCCCAAGGAACCAGTAACAAGCAGCAGCTATGGCAGGCTAGACGCAGGCTTGAGGTCATCCTACTCCCAGTTGGCTGGTTCAGGTTCATCCTACAC
TTCATCCTTCACTTCATCCTCTTTATCATCACAGTCATATGGTGGATATGGGTCTTCTGGTTTAGGAGGCTACAGTACCTTCCGGCTC

mRNA sequence

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GAAGCAGTAAGTGGGCCCAAGGAACCAGTAACAAGCAGCAGCTATGGCAGGCTAGACGCAGGCTTGAGGTCATCCTACTCCCAGTTGGCTGGTTCAGGTTCATCCTACAC
TTCATCCTTCACTTCATCCTCTTTATCATCACAGTCATATGGTGGATATGGGTCTTCTGGTTTAGGAGGCTACAGTACCTTCCGGCTC

Protein sequence

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EAVSGPKEPVTSSSYGRLDAGLRSSYSQLAGSGSSYTSSFTSSSLSSQSYGGYGSSGLGGYSTFRL

MS007110 (gene) of Bitter gourd (TR) v1 genome