CuGenDBv2

Gene ID	MS007129
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cytochrome f
Genome location	scaffold25:615169..615459
RNA-Seq Expression	MS007129
Synteny	MS007129
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009536 - plastid (cellular component) GO:0031361 - integral component of thylakoid membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0009055 - electron transfer activity (molecular function) GO:0020037 - heme binding (molecular function)
InterPro domains	IPR002325 - Cytochrome f IPR036826 - Cytochrome f large domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AKZ30323.1 cytochrome f [Goodenia hassallii]

6.2e-18

62.38

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIKKR-GYEIIIVDASMGVKWLIL---SWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNN V +AT P IVSKII K+R GYEI I DAS G + L +      LLV +GESIQLDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIKKR-GYEIIIVDASMGVKWLIL---SWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

YP_009341790.1 cytochrome f [Castanopsis concinna]

6.2e-18

62.38

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNNNV +AT+  IVSKII K K GYEI IVDAS G   V  +     LLV +GES+QLDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

YP_009430640.1 component of cytochrome b6/f complex [Gynostemma cardiospermum]

6.2e-18

63.37

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNNNV +AT   IVSKII K KRGYEI IVDAS G   V  +     LLV +GESI+LDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

YP_009439817.1 component of cytochrome b6/f complex [Gynostemma laxiflorum]

6.2e-18

63.37

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNNNV +AT   IVSKII K KRGYEI IVDAS G   V  +     LLV +GESI+LDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

YP_009439904.1 component of cytochrome b6/f complex [Gynostemma caulopterum]

6.2e-18

63.37

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNNNV +AT   IVSKII K KRGYEI IVDAS G   V  +     LLV +GESI+LDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

TrEMBL top hits

e value

%identity

Alignment

A0A0K1ZVG5 Cytochrome f

3.0e-18

62.38

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIKKR-GYEIIIVDASMGVKWLIL---SWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNN V +AT P IVSKII K+R GYEI I DAS G + L +      LLV +GESIQLDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIKKR-GYEIIIVDASMGVKWLIL---SWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

A0A1N7TDY6 Cytochrome f

3.0e-18

62.38

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNNNV +AT+  IVSKII K K GYEI IVDAS G   V  +     LLV +GES+QLDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

A0A291IAN7 Cytochrome f

3.0e-18

63.37

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNNNV +AT   IVSKII K KRGYEI IVDAS G   V  +     LLV +GESI+LDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

A0A291IAY1 Cytochrome f

3.0e-18

63.37

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNNNV +AT   IVSKII K KRGYEI IVDAS G   V  +     LLV +GESI+LDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

A0A2L0WR28 Cytochrome f

3.0e-18

63.37

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNNNV +AT   IVSKII K KRGYEI IVDAS G   V  +     LLV +GESI+LDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

SwissProt top hits

e value

%identity

Alignment

P00155 Cytochrome f

2.0e-19

58.42

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMGVKWLIL---SWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNNNV +AT   +V +II K K GYEI IVDAS G + + +      LLV +GESI+LDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMGVKWLIL---SWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

P56771 Cytochrome f

3.4e-19

58.42

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNN V +AT   I+SKI+ K K GYEI IVDAS G   +  +     LLV +GESI+LDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

Q09X04 Cytochrome f

6.9e-20

62.38

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNNNV +AT   IVSKII K K GYEI IVDAS G   V  +     LLV +GESI+LDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

Q2QD76 Cytochrome f

9.0e-20

61.39

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNNNV +AT   IVSKII K K GYEI IVDA+ G   V  +     LLV +GESI+LDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

Q9BBR8 Cytochrome f

1.5e-19

59.41

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMGVKWLIL---SWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNNNV +AT   I++KII K K GYEI IVDAS G + + +      LLV +GESI+LDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMGVKWLIL---SWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

Arabidopsis top hits

e value

%identity

Alignment

ATCG00540.1 photosynthetic electron transfer A

2.4e-20

58.42

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Query:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH
        +VGGNRGRGQIYP  SKSNN V +AT   I+SKI+ K K GYEI IVDAS G   +  +     LLV +GESI+LDQPLT+N N  GFGQG   +VL   
Subjt:  FVGGNRGRGQIYP--SKSNNNVDDATIPCIVSKIIIK-KRGYEIIIVDASMG---VKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKH

Query:  L
        L
Subjt:  L

Sequences

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CDS sequence

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TTTGTAGGCGGGAACAGGGGAAGGGGTCAGATTTATCCCAGTAAGAGTAATAATAATGTTGATGATGCTACAATACCATGTATAGTAAGCAAAATAATAATAAAAAAAAG
AGGATATGAAATAATTATAGTGGATGCATCGATGGGCGTCAAGTGGTTGATATTATCCTGGTCCCTTCTTGTTTTAGATGGCGAATCTATCCAACTTGATCAACCATTAA
CCAATAATTCTAATGCAAGAGGATTTGGTCAGGGATATTGGTCTTTAGTACTTTCAAAGCATCTA

mRNA sequence

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Protein sequence

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FVGGNRGRGQIYPSKSNNNVDDATIPCIVSKIIIKKRGYEIIIVDASMGVKWLILSWSLLVLDGESIQLDQPLTNNSNARGFGQGYWSLVLSKHL

MS007129 (gene) of Bitter gourd (TR) v1 genome