CuGenDBv2

Gene ID	MS007142
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Auxin-responsive protein
Genome location	scaffold25:770475..770849
RNA-Seq Expression	MS007142
Synteny	MS007142
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009734 - auxin-activated signaling pathway (biological process) GO:0005634 - nucleus (cellular component)
InterPro domains	IPR003311 - AUX/IAA protein IPR033389 - AUX/IAA domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7020902.1 Auxin-responsive protein IAA33, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.7e-36

69.84

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Query:  AAAEYLKKRRWPERR--------------AVAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDD----GGGGDSGSGERRLDL
        AAAEY K RRWPE +                  EED +AVIP VTVVLEGRAICQRISLHKHASYESLAKALR MFV +DD    GGGG   SG+R+LDL
Subjt:  AAAEYLKKRRWPERR--------------AVAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDD----GGGGDSGSGERRLDL

Query:  SNAVPGHLVAYEDIENDLLLAGDLNW
        +NAVPGHLVAYEDIENDLLLAGDLNW
Subjt:  SNAVPGHLVAYEDIENDLLLAGDLNW

XP_022153356.1 auxin-responsive protein IAA33 [Momordica charantia]

2.1e-58

100

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Query:  MMMKSLDSERQAAAEYLKKRRWPERRAVAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVPGH
        MMMKSLDSERQAAAEYLKKRRWPERRAVAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVPGH
Subjt:  MMMKSLDSERQAAAEYLKKRRWPERRAVAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVPGH

Query:  LVAYEDIENDLLLAGDLNW
        LVAYEDIENDLLLAGDLNW
Subjt:  LVAYEDIENDLLLAGDLNW

XP_022969694.1 auxin-responsive protein IAA33 [Cucurbita maxima]

1.0e-36

70.97

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Query:  AAAEYLKKRRWPE------------RRAVAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDG----GGGDSGSGERRLDLSN
        AAAEY K RRWPE            ++ +  EED +AVIP VTVVLEGRAICQRISLHKHASYESLAKALR MFV +DDG    GGG   SG+R+LDL+N
Subjt:  AAAEYLKKRRWPE------------RRAVAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDG----GGGDSGSGERRLDLSN

Query:  AVPGHLVAYEDIENDLLLAGDLNW
        AVPGHLVAYEDIENDLLLAGDLNW
Subjt:  AVPGHLVAYEDIENDLLLAGDLNW

XP_023538318.1 auxin-responsive protein IAA33 [Cucurbita pepo subsp. pepo]

3.5e-37

73.55

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Query:  AAAEYLKKRRWPE-------------RRAVAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVP
        AAAEY K RRWPE                   EED +AVIP VTVVLEGRAICQRISLHKHASYESLAKALR MFV +DDGGGG+  SGER+LDL+NAVP
Subjt:  AAAEYLKKRRWPE-------------RRAVAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVP

Query:  GHLVAYEDIENDLLLAGDLNW
        GHLVAYEDIENDLLLAGDLNW
Subjt:  GHLVAYEDIENDLLLAGDLNW

XP_038890972.1 auxin-responsive protein IAA33 [Benincasa hispida]

3.5e-37

76.72

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Query:  AAAEYLKKRRWPERRA-------VAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFV-PEDDGGGGDSGSGERRLDLSNAVPGHLVA
        AAAE  K RRWPERR           EED +AVIP VTVVLEGRAICQRISLHKHASYESLAKALR MFV  ED GGGG   SGER+LDL+NAVPGH+VA
Subjt:  AAAEYLKKRRWPERRA-------VAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFV-PEDDGGGGDSGSGERRLDLSNAVPGHLVA

Query:  YEDIENDLLLAGDLNW
        YEDIENDLLLAGDLNW
Subjt:  YEDIENDLLLAGDLNW

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BRI6 Auxin-responsive protein

1.2e-35

77.48

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Query:  AAAEYLKKRRWPERRA---VAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVPGHLVAYEDIE
        AAAEY K  RW ERR      AEED SAVIP VTVVLEGRAICQRISLHKH SYESLAKALR MFV +DD G     SGERRLDL+NAVPG++VAYEDIE
Subjt:  AAAEYLKKRRWPERRA---VAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVPGHLVAYEDIE

Query:  NDLLLAGDLNW
        NDLLLAGDLNW
Subjt:  NDLLLAGDLNW

A0A5A7UPU6 Auxin-responsive protein

1.2e-35

77.48

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Query:  AAAEYLKKRRWPERRA---VAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVPGHLVAYEDIE
        AAAEY K  RW ERR      AEED SAVIP VTVVLEGRAICQRISLHKH SYESLAKALR MFV +DD G     SGERRLDL+NAVPG++VAYEDIE
Subjt:  AAAEYLKKRRWPERRA---VAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVPGHLVAYEDIE

Query:  NDLLLAGDLNW
        NDLLLAGDLNW
Subjt:  NDLLLAGDLNW

A0A6J1DKE3 Auxin-responsive protein

1.0e-58

100

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Query:  MMMKSLDSERQAAAEYLKKRRWPERRAVAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVPGH
        MMMKSLDSERQAAAEYLKKRRWPERRAVAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVPGH
Subjt:  MMMKSLDSERQAAAEYLKKRRWPERRAVAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVPGH

Query:  LVAYEDIENDLLLAGDLNW
        LVAYEDIENDLLLAGDLNW
Subjt:  LVAYEDIENDLLLAGDLNW

A0A6J1FIF6 Auxin-responsive protein

9.4e-36

68.22

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Query:  AAAEYLKKRRWPERRAVA-----------------AEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGE----RR
        AAAEY K RRWPE +  +                  EED +AVIP VTVVLEGRAICQRISLHKHASYESLAKALR MFV +DDGG G  G GE    R+
Subjt:  AAAEYLKKRRWPERRAVA-----------------AEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGE----RR

Query:  LDLSNAVPGHLVAYEDIENDLLLAGDLNW
        LDL+NAVPGHLVAYEDIENDLLLAGDLNW
Subjt:  LDLSNAVPGHLVAYEDIENDLLLAGDLNW

A0A6J1I3D9 Auxin-responsive protein

5.0e-37

70.97

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Query:  AAAEYLKKRRWPE------------RRAVAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDG----GGGDSGSGERRLDLSN
        AAAEY K RRWPE            ++ +  EED +AVIP VTVVLEGRAICQRISLHKHASYESLAKALR MFV +DDG    GGG   SG+R+LDL+N
Subjt:  AAAEYLKKRRWPE------------RRAVAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDG----GGGDSGSGERRLDLSN

Query:  AVPGHLVAYEDIENDLLLAGDLNW
        AVPGHLVAYEDIENDLLLAGDLNW
Subjt:  AVPGHLVAYEDIENDLLLAGDLNW

SwissProt top hits

e value

%identity

Alignment

Q69VE0 Auxin-responsive protein IAA23

2.3e-07

36.89

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Query:  WPERRAV---AAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVP--EDDGGGGDSGSGERRLDLSNAVPGHLVAYEDIENDLLLAGD
        WP  RA    A  ED SA    V V ++G    +++ L  HA Y  L +AL GMF       GGGG  G G + +DL      ++  YED + D +L GD
Subjt:  WPERRAV---AAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVP--EDDGGGGDSGSGERRLDLSNAVPGHLVAYEDIENDLLLAGD

Query:  LNW
        + W
Subjt:  LNW

Q9FKM7 Auxin-responsive protein IAA33

9.4e-25

66.67

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Query:  EED-VSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVPGHLVAYEDIENDLLLAGDLNW
        E+D VS+V+P VTVVLEGR+ICQRISL KH SY+SLA ALR MFV        D       LDLSNA+PGHL+AYED+ENDLLLAGDL W
Subjt:  EED-VSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVPGHLVAYEDIENDLLLAGDLNW

Arabidopsis top hits

e value

%identity

Alignment

AT4G29080.1 phytochrome-associated protein 2

3.2e-04

34.12

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Query:  VTVVLEGRAICQRISLHKHASYESLAKALRGMFVP------EDDGGGGDSGSGERRLDLSNAVPGHLVAYEDIENDLLLAGDLNW
        V V +EG    ++I L  + SY  L+ AL  MF           GG G  G  E RL        ++V YED ++D +L GD+ W
Subjt:  VTVVLEGRAICQRISLHKHASYESLAKALRGMFVP------EDDGGGGDSGSGERRLDLSNAVPGHLVAYEDIENDLLLAGDLNW

AT5G57420.1 indole-3-acetic acid inducible 33

6.7e-26

66.67

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Query:  EED-VSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVPGHLVAYEDIENDLLLAGDLNW
        E+D VS+V+P VTVVLEGR+ICQRISL KH SY+SLA ALR MFV        D       LDLSNA+PGHL+AYED+ENDLLLAGDL W
Subjt:  EED-VSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVPGHLVAYEDIENDLLLAGDLNW

Sequences

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CDS sequence

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ATATATATATATATATATATGATGATGAAGAGCTTGGATTCCGAGAGACAAGCTGCGGCGGAGTACTTGAAGAAGAGGAGGTGGCCGGAGAGGAGAGCGGTGGCGGCGGA
GGAGGATGTGTCGGCGGTGATTCCGGCGGTGACGGTGGTGCTGGAGGGGCGGGCGATCTGCCAGCGGATCAGCCTCCACAAACATGCAAGCTACGAGAGCCTGGCCAAAG
CCCTCAGAGGGATGTTCGTGCCGGAGGACGACGGCGGCGGAGGAGACTCCGGCTCCGGCGAGCGGCGGCTTGACCTTTCGAACGCGGTTCCGGGTCATCTTGTTGCTTAT
GAAGACATTGAAAACGATCTTCTTCTTGCTGGTGACCTCAATTGG

mRNA sequence

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Protein sequence

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IYIYIYMMMKSLDSERQAAAEYLKKRRWPERRAVAAEEDVSAVIPAVTVVLEGRAICQRISLHKHASYESLAKALRGMFVPEDDGGGGDSGSGERRLDLSNAVPGHLVAY
EDIENDLLLAGDLNW

MS007142 (gene) of Bitter gourd (TR) v1 genome