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MS007147 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007147
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLight-harvesting chlorophyll a/b-binding protein
Genome locationscaffold25:808381..808753
RNA-Seq ExpressionMS007147
SyntenyMS007147
Gene Ontology termsGO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR022796 - Chlorophyll A-B binding protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055599.1 uncharacterized protein E6C27_scaffold222G00820 [Cucumis melo var. makuwa]1.4e-2892.11Show/hide
Query:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
        VSP KDG +K+VIMVDPLEAKRMAAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
Subjt:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
XP_008451793.1 PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo]4.5e-2788.16Show/hide
Query:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
        VSP KDG +K+VIMVDPLEAKRMAAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQ+  Y
Subjt:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
XP_011648927.1 uncharacterized protein LOC101212671 [Cucumis sativus]5.9e-2786.84Show/hide
Query:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
        VSPG+DG +K+VIMVDPLEAKRMAAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGLVIEG+TGKGILAQ+  Y
Subjt:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
XP_022153344.1 uncharacterized protein LOC111020859 [Momordica charantia]9.6e-3096.05Show/hide
Query:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
        VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQ+  Y
Subjt:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
XP_023538320.1 uncharacterized protein LOC111799137 isoform X2 [Cucurbita pepo subsp. pepo]1.7e-2684.21Show/hide
Query:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
        VSPGKD  +K+VIMVDPLEAKR+AAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGL++EGQTGKGILAQ+  Y
Subjt:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
TrEMBL top hitse value%identityAlignment
A0A0A0LH95 Uncharacterized protein2.8e-2786.84Show/hide
Query:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
        VSPG+DG +K+VIMVDPLEAKRMAAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGLVIEG+TGKGILAQ+  Y
Subjt:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
A0A1S3BSE0 uncharacterized protein LOC103492970 isoform X12.2e-2788.16Show/hide
Query:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
        VSP KDG +K+VIMVDPLEAKRMAAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQ+  Y
Subjt:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
A0A5A7UQ54 Uncharacterized protein6.7e-2992.11Show/hide
Query:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
        VSP KDG +K+VIMVDPLEAKRMAAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
Subjt:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
A0A6J1DIT0 uncharacterized protein LOC1110208594.7e-3096.05Show/hide
Query:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
        VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQ+  Y
Subjt:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
A0A6J1FC77 uncharacterized protein LOC111444076 isoform X11.4e-2684.21Show/hide
Query:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
        VSPGKD  +K+VIMVDPLEAKR+AAK+MEKIKAKEK KRRRQIEAINGAWAMIGLTAGL++EGQTGKGILAQ+  Y
Subjt:  VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G28025.1 unknown protein1.9e-2374.32Show/hide
Query:  PGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
        PGK    KEVIMVDPLEAKR+A+KQME+IK +EK +RRR+IEAINGAWA+IGL  GLVIE QTGKGILAQ+  Y
Subjt:  PGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
AT4G28025.2 unknown protein.1.9e-2374.32Show/hide
Query:  PGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY
        PGK    KEVIMVDPLEAKR+A+KQME+IK +EK +RRR+IEAINGAWA+IGL  GLVIE QTGKGILAQ+  Y
Subjt:  PGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCTCTCCTGGGAAAGATGGCTTTGTTAAAGAGGTGATCATGGTAGATCCTTTGGAAGCCAAACGAATGGCTGCGAAACAAATGGAAAAGATAAAAGCAAAAGAGAAATT
GAAGCGAAGACGTCAAATAGAAGCGATTAATGGAGCATGGGCAATGATTGGTCTCACTGCAGGGCTCGTCATCGAAGGTCAAACTGGAAAAGGCATTCTAGCGCAGGTGA
AAAGTTAT
mRNA sequenceShow/hide mRNA sequence
GTCTCTCCTGGGAAAGATGGCTTTGTTAAAGAGGTGATCATGGTAGATCCTTTGGAAGCCAAACGAATGGCTGCGAAACAAATGGAAAAGATAAAAGCAAAAGAGAAATT
GAAGCGAAGACGTCAAATAGAAGCGATTAATGGAGCATGGGCAATGATTGGTCTCACTGCAGGGCTCGTCATCGAAGGTCAAACTGGAAAAGGCATTCTAGCGCAGGTGA
AAAGTTAT
Protein sequenceShow/hide protein sequence
VSPGKDGFVKEVIMVDPLEAKRMAAKQMEKIKAKEKLKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQVKSY