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MS007153 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007153
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger protein CONSTANS-LIKE 5-like
Genome locationscaffold25:901936..902238
RNA-Seq ExpressionMS007153
SyntenyMS007153
Gene Ontology termsGO:0009909 - regulation of flower development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000315 - B-box-type zinc finger


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598861.1 Zinc finger protein CONSTANS-LIKE 5, partial [Cucurbita argyrosperma subsp. sororia]1.5e-3375Show/hide
Query:  KLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF
        K LCYSCKS+ AAL+CR DAAFLCLRCDAQIH   T      TRH RVWLCEVCE APA +TCNADAA+LC +CDADIHSVNPLARRH+RSA++PF
Subjt:  KLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF

XP_004150328.2 zinc finger protein CONSTANS-LIKE 5 [Cucumis sativus]1.1e-3373.27Show/hide
Query:  VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP
        VP  TK LC SCKS+ AAL+CR D AFLCLRCDAQIH       L  TRH RVWLCEVCE APA +TCNADAAALC +CDADIHSVNPLARRH+RSA++P
Subjt:  VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP

Query:  F
        F
Subjt:  F

XP_008451877.1 PREDICTED: zinc finger protein CONSTANS-LIKE 5-like [Cucumis melo]1.7e-3473.27Show/hide
Query:  VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP
        VP  TK LCYSCKS+ A L+CR D AFLCLRCDAQIH       L  TRH RVWLCEVCE APA +TCNADAAALC +CDADIHSVNPLARRH+RSA++P
Subjt:  VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP

Query:  F
        F
Subjt:  F

XP_022153294.1 zinc finger protein CONSTANS-LIKE 5-like [Momordica charantia]1.2e-51100Show/hide
Query:  VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP
        VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP
Subjt:  VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP

Query:  F
        F
Subjt:  F

XP_022997440.1 zinc finger protein CONSTANS-LIKE 5-like [Cucurbita maxima]6.6e-3476.04Show/hide
Query:  KLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF
        K LCYSCKS+ AAL+CR DAAFLCLRCDAQIH   T      TRH RVWLCEVCE APA +TCNADAAALC +CDADIHSVNPLARRH+RSA++PF
Subjt:  KLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF

TrEMBL top hitse value%identityAlignment
A0A0A0LK83 Uncharacterized protein5.4e-3473.27Show/hide
Query:  VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP
        VP  TK LC SCKS+ AAL+CR D AFLCLRCDAQIH       L  TRH RVWLCEVCE APA +TCNADAAALC +CDADIHSVNPLARRH+RSA++P
Subjt:  VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP

Query:  F
        F
Subjt:  F

A0A1S3BTB5 zinc finger protein CONSTANS-LIKE 5-like8.4e-3573.27Show/hide
Query:  VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP
        VP  TK LCYSCKS+ A L+CR D AFLCLRCDAQIH       L  TRH RVWLCEVCE APA +TCNADAAALC +CDADIHSVNPLARRH+RSA++P
Subjt:  VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP

Query:  F
        F
Subjt:  F

A0A5A7UM20 Zinc finger protein CONSTANS-LIKE 5-like8.4e-3573.27Show/hide
Query:  VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP
        VP  TK LCYSCKS+ A L+CR D AFLCLRCDAQIH       L  TRH RVWLCEVCE APA +TCNADAAALC +CDADIHSVNPLARRH+RSA++P
Subjt:  VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP

Query:  F
        F
Subjt:  F

A0A6J1DIM9 zinc finger protein CONSTANS-LIKE 5-like5.8e-52100Show/hide
Query:  VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP
        VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP
Subjt:  VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP

Query:  F
        F
Subjt:  F

A0A6J1K9M9 zinc finger protein CONSTANS-LIKE 5-like3.2e-3476.04Show/hide
Query:  KLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF
        K LCYSCKS+ AAL+CR DAAFLCLRCDAQIH   T      TRH RVWLCEVCE APA +TCNADAAALC +CDADIHSVNPLARRH+RSA++PF
Subjt:  KLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF

SwissProt top hitse value%identityAlignment
O50055 Zinc finger protein CONSTANS-LIKE 11.7e-2456.52Show/hide
Query:  CYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP
        C +C+S+A  +YCRAD+A+LC  CDAQ+H  N      A+RH RV +C+ CE APAA  C ADAA+LC TCD++IHS NPLARRH+R  + P
Subjt:  CYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP

Q39057 Zinc finger protein CONSTANS1.4e-2353.26Show/hide
Query:  CYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP
        C +C+S+A  +YC AD+A+LC+ CDAQ+H  N      A+RH RV +CE CE APAA  C AD A+LC  CD+++HS NPLARRH+R  + P
Subjt:  CYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP

Q940T9 Zinc finger protein CONSTANS-LIKE 44.4e-3374.47Show/hide
Query:  LCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF
        LC SCKS+ AALYCR DAAFLCL CD+++H  N  KL  A+RHARVW+CEVCE APA VTC ADAAALCVTCD DIHS NPLARRHER  V PF
Subjt:  LCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF

Q9FHH8 Zinc finger protein CONSTANS-LIKE 51.5e-2865.59Show/hide
Query:  CYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF
        C +CKS  AA++CR D+AFLC+ CD +IH          TRH RVW+CEVCE APAAVTC ADAAALCV+CDADIHS NPLA RHER  VE F
Subjt:  CYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF

Q9SK53 Zinc finger protein CONSTANS-LIKE 34.1e-3172.34Show/hide
Query:  LCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF
        LC SCKS+AA L+CRADAAFLC  CD +IH  N  KL  A+RH RVWLCEVCE APA VTC ADAAALCVTCD DIHS NPL+RRHER  + PF
Subjt:  LCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF

Arabidopsis top hitse value%identityAlignment
AT2G24790.1 CONSTANS-like 32.9e-3272.34Show/hide
Query:  LCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF
        LC SCKS+AA L+CRADAAFLC  CD +IH  N  KL  A+RH RVWLCEVCE APA VTC ADAAALCVTCD DIHS NPL+RRHER  + PF
Subjt:  LCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF

AT2G24790.2 CONSTANS-like 32.9e-3272.34Show/hide
Query:  LCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF
        LC SCKS+AA L+CRADAAFLC  CD +IH  N  KL  A+RH RVWLCEVCE APA VTC ADAAALCVTCD DIHS NPL+RRHER  + PF
Subjt:  LCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF

AT5G15850.1 CONSTANS-like 11.2e-2556.52Show/hide
Query:  CYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP
        C +C+S+A  +YCRAD+A+LC  CDAQ+H  N      A+RH RV +C+ CE APAA  C ADAA+LC TCD++IHS NPLARRH+R  + P
Subjt:  CYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEP

AT5G24930.1 CONSTANS-like 43.1e-3474.47Show/hide
Query:  LCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF
        LC SCKS+ AALYCR DAAFLCL CD+++H  N  KL  A+RHARVW+CEVCE APA VTC ADAAALCVTCD DIHS NPLARRHER  V PF
Subjt:  LCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF

AT5G57660.1 CONSTANS-like 51.0e-2965.59Show/hide
Query:  CYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF
        C +CKS  AA++CR D+AFLC+ CD +IH          TRH RVW+CEVCE APAAVTC ADAAALCV+CDADIHS NPLA RHER  VE F
Subjt:  CYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCCCAACGCCCACTAAATTACTCTGTTATTCCTGCAAGTCCAGCGCCGCGGCGCTGTACTGCCGCGCCGACGCCGCCTTCCTCTGTCTCCGCTGCGACGCCCAAATCCA
CGGCCCCAACACTGCAAAGCTCCTGCCCGCCACGCGCCACGCGCGTGTCTGGCTCTGCGAGGTCTGCGAGCACGCGCCCGCCGCCGTCACGTGCAATGCAGACGCCGCCG
CGCTCTGCGTCACCTGCGACGCCGACATCCACTCCGTCAACCCCCTCGCCCGCCGCCACGAGCGCTCCGCCGTCGAACCCTTC
mRNA sequenceShow/hide mRNA sequence
GTCCCAACGCCCACTAAATTACTCTGTTATTCCTGCAAGTCCAGCGCCGCGGCGCTGTACTGCCGCGCCGACGCCGCCTTCCTCTGTCTCCGCTGCGACGCCCAAATCCA
CGGCCCCAACACTGCAAAGCTCCTGCCCGCCACGCGCCACGCGCGTGTCTGGCTCTGCGAGGTCTGCGAGCACGCGCCCGCCGCCGTCACGTGCAATGCAGACGCCGCCG
CGCTCTGCGTCACCTGCGACGCCGACATCCACTCCGTCAACCCCCTCGCCCGCCGCCACGAGCGCTCCGCCGTCGAACCCTTC
Protein sequenceShow/hide protein sequence
VPTPTKLLCYSCKSSAAALYCRADAAFLCLRCDAQIHGPNTAKLLPATRHARVWLCEVCEHAPAAVTCNADAAALCVTCDADIHSVNPLARRHERSAVEPF