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MS007174 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007174
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRetrotransposon protein
Genome locationscaffold25:1152920..1153168
RNA-Seq ExpressionMS007174
SyntenyMS007174
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.5e-0744.3Show/hide
Query:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLL
        +A+     QL+ IA W +EK   E   R EV+ QL+ IP+L  RD  KL+ ILF +V+ I GFLS+P   +  YC  LL
Subjt:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLL

KAA0065769.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]5.6e-0744.3Show/hide
Query:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLL
        +AM  +  QL+ IA WL+EK   E      V+ QL+ IP L  RD  KL+ ILF +V+ I+GFLS+P   +  YC  LL
Subjt:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLL

XP_022158565.1 uncharacterized protein LOC111025018 [Momordica charantia]9.6e-1554.22Show/hide
Query:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLLGKSE
        T MR+QT  LEK+A W ++K +++ ARRK V DQLKQIP+L+  D V+LV IL TNV+K   FL VP+ +++ +C  LLGKSE
Subjt:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLLGKSE

XP_038895773.1 uncharacterized protein LOC120083935 [Benincasa hispida]6.0e-0944.16Show/hide
Query:  QTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLLGKS
        ++  + ++A+W +EKY+ E  RRKEV++ +  I  LD  D V L+ +L T++QK N FL+VP H R+RYC  LLG++
Subjt:  QTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLLGKS

XP_038896380.1 uncharacterized protein LOC120084641 [Benincasa hispida]3.0e-0839.02Show/hide
Query:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLLGKS
        + + +Q+  + ++A+W +EKY+ E  RRKEV++ +  I  LD  D V  + +L T++QK + FL+VP H R+RYC +LL ++
Subjt:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLLGKS

TrEMBL top hitse value%identityAlignment
A0A5A7SQU2 Putative nuclease HARBI17.2e-0844.3Show/hide
Query:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLL
        +A+     QL+ IA W +EK   E   R EV+ QL+ IP+L  RD  KL+ ILF +V+ I GFLS+P   +  YC  LL
Subjt:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLL

A0A5D3BBW3 Putative nuclease HARBI12.7e-0744.3Show/hide
Query:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLL
        +AM  +  QL+ IA WL+EK   E      V+ QL+ IP L  RD  KL+ ILF +V+ I+GFLS+P   +  YC  LL
Subjt:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLL

A0A5D3CT52 Retrotransposon protein6.1e-0744.3Show/hide
Query:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLL
        +AM     QL+ IA W +EK   E   R EV+ QL+ I +L  RD  KL+ ILF +V+ I GFLS+P+  +  YC  LL
Subjt:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLL

A0A5D3CVB7 Retrotransposon protein6.1e-0743.04Show/hide
Query:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLL
        +AM+    QL+ IA WL+EK   +   R  V+ QL+ IP L  RD  K++ ILF +V+ I GFLS+P   +  YC  LL
Subjt:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLL

A0A6J1DW73 uncharacterized protein LOC1110250184.6e-1554.22Show/hide
Query:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLLGKSE
        T MR+QT  LEK+A W ++K +++ ARRK V DQLKQIP+L+  D V+LV IL TNV+K   FL VP+ +++ +C  LLGKSE
Subjt:  TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLLGKSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACAGCAATGCGTTTGCAAACGATTCAGCTTGAGAAGATTGCAGCATGGCTGGAGGAGAAGTACAAACGGGAGGCTGCACGAAGGAAAGAAGTGCTTGACCAGCTTAAACA
AATACCGGACTTGGACGGGCGTGACATTGTAAAACTTGTACATATTTTGTTCACTAATGTTCAGAAGATCAATGGTTTCCTATCTGTCCCGCTGCACTGGAGAGAAAGGT
ATTGCAGGTATCTGTTGGGAAAAAGTGAA
mRNA sequenceShow/hide mRNA sequence
ACAGCAATGCGTTTGCAAACGATTCAGCTTGAGAAGATTGCAGCATGGCTGGAGGAGAAGTACAAACGGGAGGCTGCACGAAGGAAAGAAGTGCTTGACCAGCTTAAACA
AATACCGGACTTGGACGGGCGTGACATTGTAAAACTTGTACATATTTTGTTCACTAATGTTCAGAAGATCAATGGTTTCCTATCTGTCCCGCTGCACTGGAGAGAAAGGT
ATTGCAGGTATCTGTTGGGAAAAAGTGAA
Protein sequenceShow/hide protein sequence
TAMRLQTIQLEKIAAWLEEKYKREAARRKEVLDQLKQIPDLDGRDIVKLVHILFTNVQKINGFLSVPLHWRERYCRYLLGKSE