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MS007191 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007191
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGDP-L-fucose synthase
Genome locationscaffold25:1300171..1300476
RNA-Seq ExpressionMS007191
SyntenyMS007191
Gene Ontology termsGO:0042351 - 'de novo' GDP-L-fucose biosynthetic process (biological process)
GO:0050577 - GDP-L-fucose synthase activity (molecular function)
InterPro domainsIPR001509 - NAD-dependent epimerase/dehydratase
IPR036291 - NAD(P)-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043095.1 putative GDP-L-fucose synthase 2 [Cucumis melo var. makuwa]1.7e-5098.04Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADAVVFLME+YSDL HLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        QN
Subjt:  QN

XP_004144717.1 putative GDP-L-fucose synthase 2 [Cucumis sativus]1.7e-5098.04Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADAVVFLME+YSDL HLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        QN
Subjt:  QN

XP_008452484.1 PREDICTED: putative GDP-L-fucose synthase 2 [Cucumis melo]1.7e-5098.04Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADAVVFLME+YSDL HLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        QN
Subjt:  QN

XP_022153288.1 putative GDP-L-fucose synthase 2 [Momordica charantia]2.7e-51100Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        QN
Subjt:  QN

XP_038889124.1 putative GDP-L-fucose synthase 2 [Benincasa hispida]1.7e-5098.04Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADAVVFLME+YSDL HLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        QN
Subjt:  QN

TrEMBL top hitse value%identityAlignment
A0A0A0LH41 GDP-L-fucose synthase8.4e-5198.04Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADAVVFLME+YSDL HLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        QN
Subjt:  QN

A0A1S3BTW0 GDP-L-fucose synthase8.4e-5198.04Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADAVVFLME+YSDL HLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        QN
Subjt:  QN

A0A5D3BBR3 GDP-L-fucose synthase8.4e-5198.04Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADAVVFLME+YSDL HLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        QN
Subjt:  QN

A0A6J1DH31 GDP-L-fucose synthase1.3e-51100Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        QN
Subjt:  QN

A0A6J1G3B1 GDP-L-fucose synthase5.5e-5096.08Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADAV FLME+YSDL H+NVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        QN
Subjt:  QN

SwissProt top hitse value%identityAlignment
O49213 GDP-L-fucose synthase 15.3e-4276.47Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADA VFL+++YS L H+N+GSG+EV+I+ELAELVKEVVGFEG L WD +KPDGTPRKLMDSSKLA LGW PK+SL+DGL  TY WY+
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        +N
Subjt:  QN

P55353 GDP-L-fucose synthase6.7e-2954.9Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        G+P R+FL+ +D +DA+VFL++ YS+  H+N+GSG E+SI ELA +V  VVGF+GD+V+D SKPDGTPRKL+ S +L  +GW PK SL+ GL  +Y+ +V
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
         N
Subjt:  QN

Q67WR2 Probable GDP-L-fucose synthase 13.9e-4580.39Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADAV+FLM+ YS L H+NVGSG EV+IKELAELVKEVVGF+G LVWD SKPDGTPRKLMDSSK+ E+GW PK+ LK+GLV+TYKWYV
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        +N
Subjt:  QN

Q67WR5 Putative GDP-L-fucose synthase 22.3e-2951.96Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        G+  REF HVDDLA+AVV LME+YS   H+NVGSG+EV+++ELAE V+ VVG+EG + WD ++P+G  R+++DS ++ +LGW P+++L+DG+ D Y++Y+
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        ++
Subjt:  QN

Q9LMU0 Putative GDP-L-fucose synthase 27.3e-4481.37Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADA VFLM+QYS   H+NVGSG EV+IKELAELVKEVVGF+G LVWD +KPDGTPRKLMDSSKLA LGW PKISLKDGL  TY+WY+
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        +N
Subjt:  QN

Arabidopsis top hitse value%identityAlignment
AT1G17890.1 NAD(P)-binding Rossmann-fold superfamily protein5.2e-4581.37Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADA VFLM+QYS   H+NVGSG EV+IKELAELVKEVVGF+G LVWD +KPDGTPRKLMDSSKLA LGW PKISLKDGL  TY+WY+
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        +N
Subjt:  QN

AT1G17890.2 NAD(P)-binding Rossmann-fold superfamily protein5.2e-4581.37Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADA VFLM+QYS   H+NVGSG EV+IKELAELVKEVVGF+G LVWD +KPDGTPRKLMDSSKLA LGW PKISLKDGL  TY+WY+
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        +N
Subjt:  QN

AT1G17890.3 NAD(P)-binding Rossmann-fold superfamily protein5.2e-4581.37Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADA VFLM+QYS   H+NVGSG EV+IKELAELVKEVVGF+G LVWD +KPDGTPRKLMDSSKLA LGW PKISLKDGL  TY+WY+
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        +N
Subjt:  QN

AT1G73250.1 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 13.7e-4376.47Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV
        GSPLREFLHVDDLADA VFL+++YS L H+N+GSG+EV+I+ELAELVKEVVGFEG L WD +KPDGTPRKLMDSSKLA LGW PK+SL+DGL  TY WY+
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYV

Query:  QN
        +N
Subjt:  QN

AT5G59290.1 UDP-glucuronic acid decarboxylase 38.4e-1136.56Show/hide
Query:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAE-LGWNPKISLKDGL
        G+  R F +V D+ D ++ LME  +D   +N+G+  E ++ ELAE VKE++    ++   ++ PD   ++  D SK  E LGW PK+ L++GL
Subjt:  GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAE-LGWNPKISLKDGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAAGCCCTCTCCGGGAGTTTCTCCACGTCGACGATCTGGCCGATGCCGTCGTCTTCCTCATGGAGCAATACAGCGATTTGAGCCATTTGAATGTCGGAAGTGGGAAGGA
AGTGAGCATCAAGGAGCTGGCTGAATTGGTGAAGGAAGTGGTGGGATTTGAAGGAGATCTTGTTTGGGACAAATCAAAGCCTGATGGAACTCCAAGGAAATTGATGGACA
GCTCCAAACTTGCAGAATTGGGATGGAATCCAAAGATTTCTCTGAAAGATGGCCTTGTGGATACTTACAAATGGTATGTTCAAAAT
mRNA sequenceShow/hide mRNA sequence
GGAAGCCCTCTCCGGGAGTTTCTCCACGTCGACGATCTGGCCGATGCCGTCGTCTTCCTCATGGAGCAATACAGCGATTTGAGCCATTTGAATGTCGGAAGTGGGAAGGA
AGTGAGCATCAAGGAGCTGGCTGAATTGGTGAAGGAAGTGGTGGGATTTGAAGGAGATCTTGTTTGGGACAAATCAAAGCCTGATGGAACTCCAAGGAAATTGATGGACA
GCTCCAAACTTGCAGAATTGGGATGGAATCCAAAGATTTCTCTGAAAGATGGCCTTGTGGATACTTACAAATGGTATGTTCAAAAT
Protein sequenceShow/hide protein sequence
GSPLREFLHVDDLADAVVFLMEQYSDLSHLNVGSGKEVSIKELAELVKEVVGFEGDLVWDKSKPDGTPRKLMDSSKLAELGWNPKISLKDGLVDTYKWYVQN