CuGenDBv2

Gene ID	MS007196
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase subunit beta''
Genome location	scaffold25:1342165..1342443
RNA-Seq Expression	MS007196
Synteny	MS007196
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

OMP13909.1 hypothetical protein COLO4_00652 [Corchorus olitorius]

9.7e-13

60.81

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Query:  ERIFIQILIGRILANDIYIS-RCIGIRNQDIGIGLIIRFITFQTQYIFRLPYIFRFPLLVGVHLRFADYVTIQI
        ERIFIQ LIGR+LA+DIY+  RCI IRNQDIG+GL+ RF+TF+        Y+F  PLLVGVHL F DYV + +
Subjt:  ERIFIQILIGRILANDIYIS-RCIGIRNQDIGIGLIIRFITFQTQYIFRLPYIFRFPLLVGVHLRFADYVTIQI

QHN53241.1 RNA polymerase beta subunit [Pouzolzia hirta]

5.3e-11

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Query:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI
        M+SERIFIQIL+GR+LA+DIYI SRCI IRNQDIGIGL+ RFITFQTQ I
Subjt:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI

QHN53667.1 RNA polymerase beta subunit [Pipturus arborescens]

5.3e-11

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Query:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI
        M+SERIFIQIL+GR+LA+DIYI SRCI IRNQDIGIGL+ RFITFQTQ I
Subjt:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI

YP_009659146.1 RNA polymerase beta' subunit-2 [Antiaris toxicaria]

3.1e-11

76.79

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Query:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYIF-RLPY
        M+SERIFIQ LIGR+LA+DIYI SRCI +RNQDIGIGL+ RFITFQTQ IF R P+
Subjt:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYIF-RLPY

YP_010035503.1 RNA polymerase beta'' subunit [Pouzolzia hirta]

5.3e-11

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Query:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI
        M+SERIFIQIL+GR+LA+DIYI SRCI IRNQDIGIGL+ RFITFQTQ I
Subjt:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI

TrEMBL top hits

e value

%identity

Alignment

A0A1R3L3P6 DNA-directed RNA polymerase

4.7e-13

60.81

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Query:  ERIFIQILIGRILANDIYIS-RCIGIRNQDIGIGLIIRFITFQTQYIFRLPYIFRFPLLVGVHLRFADYVTIQI
        ERIFIQ LIGR+LA+DIY+  RCI IRNQDIG+GL+ RF+TF+        Y+F  PLLVGVHL F DYV + +
Subjt:  ERIFIQILIGRILANDIYIS-RCIGIRNQDIGIGLIIRFITFQTQYIFRLPYIFRFPLLVGVHLRFADYVTIQI

A0A4P8PGQ0 DNA-directed RNA polymerase subunit beta''

1.5e-11

76.79

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Query:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYIF-RLPY
        M+SERIFIQ LIGR+LA+DIYI SRCI +RNQDIGIGL+ RFITFQTQ IF R P+
Subjt:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYIF-RLPY

A0A6B9TUI9 DNA-directed RNA polymerase subunit beta''

2.6e-11

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Query:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI
        M+SERIFIQIL+GR+LA+DIYI SRCI IRNQDIGIGL+ RFITFQTQ I
Subjt:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI

A0A6B9TVA6 DNA-directed RNA polymerase subunit beta''

2.6e-11

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Query:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI
        M+SERIFIQIL+GR+LA+DIYI SRCI IRNQDIGIGL+ RFITFQTQ I
Subjt:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI

A0A7T8V5W5 RNA polymerase beta'' subunit

2.6e-11

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Query:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI
        M+SERIFIQIL+GR+LA+DIYI SRCI IRNQDIGIGL+ RFITFQTQ I
Subjt:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI

SwissProt top hits

e value

%identity

Alignment

A4QJA5 DNA-directed RNA polymerase subunit beta''

5.0e-12

67.8

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Query:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI-FRLPYIFR
        M+SERIFIQ LIGR+LA+DIYI SRC+  RNQD+GIGL+ RFITF TQ I  R P+  R
Subjt:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI-FRLPYIFR

A4QK08 DNA-directed RNA polymerase subunit beta''

5.0e-12

67.8

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Query:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI-FRLPYIFR
        M+SERIFIQ LIGR+LA+DIYI SRC+  RNQD+GIGL+ RFITF TQ I  R P+  R
Subjt:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI-FRLPYIFR

A4QL09 DNA-directed RNA polymerase subunit beta''

5.0e-12

67.8

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Query:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI-FRLPYIFR
        M+SERIFIQ LIGR+LA+DIYI SRC+  RNQD+GIGL+ RFITF TQ I  R P+  R
Subjt:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI-FRLPYIFR

Q4VZP3 DNA-directed RNA polymerase subunit beta''

4.5e-13

71.19

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Query:  MVSERIFIQILIGRILANDIYIS-RCIGIRNQDIGIGLIIRFITFQTQYI-FRLPYIFR
        M+ ERIFIQ LIGR+LA+DIY+  RCIG+RNQDIGIGLI RFITFQTQ I  R P+  R
Subjt:  MVSERIFIQILIGRILANDIYIS-RCIGIRNQDIGIGLIIRFITFQTQYI-FRLPYIFR

Q9BBS7 DNA-directed RNA polymerase subunit beta''

1.3e-12

72.88

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Query:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYIF-RLPYIFR
        M+SERI IQ LIGR+LA+DIYI SRCI +RNQDIGIGLI RFI FQTQ IF R P+  R
Subjt:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYIF-RLPYIFR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00170.1 DNA-directed RNA polymerase family protein

1.8e-12

66.1

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Query:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI-FRLPYIFR
        M+SERIFIQ LIGR+LA+DIYI SRC+  RNQD+GIGL+ R ITF TQ I  R P+  R
Subjt:  MVSERIFIQILIGRILANDIYI-SRCIGIRNQDIGIGLIIRFITFQTQYI-FRLPYIFR

Sequences

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CDS sequence

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ATGGTTTCGGAAAGAATATTTATCCAAATATTAATTGGTCGTATATTAGCGAACGATATATATATATCGCGATGCATTGGCATTAGAAATCAAGACATTGGTATTGGACT
TATCATTCGATTCATAACCTTTCAAACACAATATATATTCAGACTCCCTTATATATTCAGATTCCCTTTACTTGTAGGAGTACATCTTAGATTTGCCGATTATGTTACTA
TTCAAATATTCTCATACATCATTATAAATTTTTCTATAAAACAAACGTGG

mRNA sequence

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Protein sequence

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MVSERIFIQILIGRILANDIYISRCIGIRNQDIGIGLIIRFITFQTQYIFRLPYIFRFPLLVGVHLRFADYVTIQIFSYIIINFSIKQTW

MS007196 (gene) of Bitter gourd (TR) v1 genome