; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS007237 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007237
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTrafficking protein particle complex subunit
Genome locationscaffold25:1667457..1669002
RNA-Seq ExpressionMS007237
SyntenyMS007237
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0030008 - TRAPP complex (cellular component)
InterPro domainsIPR007233 - Trafficking protein particle complex subunit
IPR011012 - Longin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN61053.2 hypothetical protein Csa_021294 [Cucumis sativus]2.6e-7396.45Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG+ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR
        LYTDFVLKNPFYEMEMPIRCELFDINL+QAVQKDRVAL GR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR

XP_004144741.1 trafficking protein particle complex subunit 4 [Cucumis sativus]2.6e-7396.45Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG+ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR
        LYTDFVLKNPFYEMEMPIRCELFDINL+QAVQKDRVAL GR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR

XP_008453237.1 PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo]7.7e-7395.74Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG+ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR
        LYTDFVLKNPFYEMEMPIRCELFDINL+QAVQK+RVAL GR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR

XP_022156391.1 trafficking protein particle complex subunit 4 [Momordica charantia]1.7e-75100Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR
        LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR

XP_024019104.1 trafficking protein particle complex subunit 4 [Morus notabilis]1.0e-7295.04Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP+SGCSGIELL+AD+FDLHCFQSLTGTKFFVVCEPGTQHMEGLLK+IYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR
        LYTD+VLKNPFYEMEMPIRCELFDINL+QAVQKDRVAL GR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR

TrEMBL top hitse value%identityAlignment
A0A0A0LJ20 Trafficking protein particle complex subunit1.3e-7396.45Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG+ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR
        LYTDFVLKNPFYEMEMPIRCELFDINL+QAVQKDRVAL GR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR

A0A1S3BVQ7 Trafficking protein particle complex subunit3.7e-7395.74Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG+ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR
        LYTDFVLKNPFYEMEMPIRCELFDINL+QAVQK+RVAL GR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR

A0A5A7TWY1 Trafficking protein particle complex subunit3.7e-7395.74Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG+ELLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR
        LYTDFVLKNPFYEMEMPIRCELFDINL+QAVQK+RVAL GR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR

A0A6J1DUU4 Trafficking protein particle complex subunit8.0e-76100Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR
        LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR

A0A6J1KK16 Trafficking protein particle complex subunit1.1e-7296.45Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSG ELLEADTFDLHCFQSLTGTKFFVVCEPGT HMEGLLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR
        LYTD+VLKNPFYEMEMPIRCELFDINL QAVQKDRVAL GR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR

SwissProt top hitse value%identityAlignment
Q2TBL9 Trafficking protein particle complex subunit 46.8e-3255.65Show/hide
Query:  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN
        R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P    ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD N
Subjt:  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN

Query:  LSQAVQ-KDRVALFG
        L  A++  ++   FG
Subjt:  LSQAVQ-KDRVALFG

Q54UU1 Trafficking protein particle complex subunit 48.6e-3552.76Show/hide
Query:  IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISG-CSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELY
        I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSP+SG  SGIE++E + F L CFQ+ TG KF+V+ +P  Q +E LL  +YELY
Subjt:  IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISG-CSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELY

Query:  TDFVLKNPFYEMEMPIRCELFDINLSQ
        TD+VLKNPFYE+EM IRC+LFD  L++
Subjt:  TDFVLKNPFYEMEMPIRCELFDINLSQ

Q69BT7 Trafficking protein particle complex subunit 46.8e-3255.65Show/hide
Query:  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN
        R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P    ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD N
Subjt:  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN

Query:  LSQAVQ-KDRVALFG
        L  A++  ++   FG
Subjt:  LSQAVQ-KDRVALFG

Q9ES56 Trafficking protein particle complex subunit 46.8e-3255.65Show/hide
Query:  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN
        R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHCFQ+LTG KF V+ +P    ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD N
Subjt:  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN

Query:  LSQAVQ-KDRVALFG
        L  A++  ++   FG
Subjt:  LSQAVQ-KDRVALFG

Q9Y296 Trafficking protein particle complex subunit 41.5e-3154.78Show/hide
Query:  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN
        R+ +N+ L +AS++HS+ AI  QLSP  G SGIE+LE DTF LHC+Q+LTG KF V+ +P    ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD N
Subjt:  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN

Query:  LSQAVQ-KDRVALFG
        L  A++  ++   FG
Subjt:  LSQAVQ-KDRVALFG

Arabidopsis top hitse value%identityAlignment
AT1G51160.1 SNARE-like superfamily protein1.8e-1127.08Show/hide
Query:  YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPIS--------------GCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGT
        + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P++              GCS       +T+ L   ++ +G K  +V  P T
Subjt:  YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPIS--------------GCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGT

Query:  QHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLSQAVQ
          +   LKYIY LY ++V+KNP Y    PI+ ELF+  L Q V+
Subjt:  QHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLSQAVQ

AT1G51160.2 SNARE-like superfamily protein1.8e-1127.08Show/hide
Query:  YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPIS--------------GCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGT
        + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P++              GCS       +T+ L   ++ +G K  +V  P T
Subjt:  YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPIS--------------GCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGT

Query:  QHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLSQAVQ
          +   LKYIY LY ++V+KNP Y    PI+ ELF+  L Q V+
Subjt:  QHMEGLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLSQAVQ

AT5G02280.1 SNARE-like superfamily protein3.1e-7290.07Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE
        MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSP++GCSGIELLEADTFDLHCFQSL GTKFFVVCEPGT HME LL+YIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR
        LYTD+VLKNPFYE+EMPIRCELFDINL+QAVQ DRVAL GR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLSQAVQKDRVALFGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCGATTTACAGTCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACGAATGATAGCTTGAGAGTGGC
GAGTTTATGGCACTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATCTCTGGTTGTTCGGGCATCGAACTCCTTGAAGCTGACACATTCGACCTCCATTGCTTCCAGT
CTCTTACTGGGACGAAGTTTTTTGTCGTGTGTGAGCCCGGTACACAGCACATGGAGGGTCTTCTGAAATACATTTATGAGTTATACACAGACTTTGTGTTGAAGAATCCA
TTCTATGAGATGGAGATGCCTATACGGTGTGAGCTCTTTGACATCAACCTATCGCAGGCAGTGCAGAAGGATCGTGTTGCTTTGTTTGGGCGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCGATTTACAGTCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACGAATGATAGCTTGAGAGTGGC
GAGTTTATGGCACTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATCTCTGGTTGTTCGGGCATCGAACTCCTTGAAGCTGACACATTCGACCTCCATTGCTTCCAGT
CTCTTACTGGGACGAAGTTTTTTGTCGTGTGTGAGCCCGGTACACAGCACATGGAGGGTCTTCTGAAATACATTTATGAGTTATACACAGACTTTGTGTTGAAGAATCCA
TTCTATGAGATGGAGATGCCTATACGGTGTGAGCTCTTTGACATCAACCTATCGCAGGCAGTGCAGAAGGATCGTGTTGCTTTGTTTGGGCGA
Protein sequenceShow/hide protein sequence
MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNP
FYEMEMPIRCELFDINLSQAVQKDRVALFGR