CuGenDBv2

Gene ID	MS007267
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	zinc finger matrin-type protein 2
Genome location	scaffold25:1861509..1863747
RNA-Seq Expression	MS007267
Synteny	MS007267
Gene Ontology terms	GO:0000398 - mRNA splicing, via spliceosome (biological process) GO:0005681 - spliceosomal complex (cellular component) GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR003604 - Matrin/U1-C-like, C2H2-type zinc finger IPR022755 - Zinc finger, double-stranded RNA binding IPR036236 - Zinc finger C2H2 superfamily IPR040107 - U4/U6.U5 small nuclear ribonucleoprotein component Snu23

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7021061.1 Zinc finger matrin-type protein 2 [Cucurbita argyrosperma subsp. argyrosperma]

3.9e-91

89.32

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Query:  AAGVDNTFRRKFDREEYLERARDREKQVGAFGI------------YLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDS
        AAGVDNTFRRKFDREEYLERARDREKQV AFGI             LKGPPVQRKPLKHRDYEVDL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDS
Subjt:  AAGVDNTFRRKFDREEYLERARDREKQVGAFGI------------YLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDS

Query:  ANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGG
        ANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEE+R+R+RRERKKEKKKEKAAE+EPE+DPDVAAMMGFGG
Subjt:  ANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGG

Query:  FRSSKK
        FRSSKK
Subjt:  FRSSKK

TYJ96481.1 zinc finger matrin-type protein 2 [Cucumis melo var. makuwa]

5.6e-90

93.33

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Query:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
        AAGVDNTFRRKFDREEYLERAR+REKQ V      LKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
Subjt:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK

Query:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK
        HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQQEEE+R+R+RRERKKEKKKEKAAEEEPE+DPDVAAMMGFGGFRSSKK
Subjt:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK

XP_008453709.1 PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo]

5.6e-90

93.33

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Query:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
        AAGVDNTFRRKFDREEYLERAR+REKQ V      LKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
Subjt:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK

Query:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK
        HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQQEEE+R+R+RRERKKEKKKEKAAEEEPE+DPDVAAMMGFGGFRSSKK
Subjt:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK

XP_011648855.1 zinc finger matrin-type protein 2 [Cucumis sativus]

1.5e-90

93.85

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Query:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
        AAGVDNTFRRKFDREEYLERARDREKQ V      LKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
Subjt:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK

Query:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK
        HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQQEEE+R+R+RRERKKEKKKEKAAEEEPE+DPDVAAMMGFGGFRSSKK
Subjt:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK

XP_022156440.1 zinc finger matrin-type protein 2 [Momordica charantia]

1.7e-91

95.9

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Query:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
        AAGVDNTFRRKFDREEYLERARDREKQ        LKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
Subjt:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK

Query:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK
        HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK
Subjt:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LM02 U1-type domain-containing protein

7.1e-91

93.85

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Query:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
        AAGVDNTFRRKFDREEYLERARDREKQ V      LKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
Subjt:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK

Query:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK
        HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQQEEE+R+R+RRERKKEKKKEKAAEEEPE+DPDVAAMMGFGGFRSSKK
Subjt:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK

A0A1S3BWZ9 zinc finger matrin-type protein 2

2.7e-90

93.33

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Query:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
        AAGVDNTFRRKFDREEYLERAR+REKQ V      LKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
Subjt:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK

Query:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK
        HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQQEEE+R+R+RRERKKEKKKEKAAEEEPE+DPDVAAMMGFGGFRSSKK
Subjt:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK

A0A5D3BCY1 Zinc finger matrin-type protein 2

2.7e-90

93.33

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Query:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
        AAGVDNTFRRKFDREEYLERAR+REKQ V      LKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
Subjt:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK

Query:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK
        HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQQEEE+R+R+RRERKKEKKKEKAAEEEPE+DPDVAAMMGFGGFRSSKK
Subjt:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK

A0A6J1DQA3 zinc finger matrin-type protein 2

8.4e-92

95.9

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Query:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
        AAGVDNTFRRKFDREEYLERARDREKQ        LKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
Subjt:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK

Query:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK
        HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK
Subjt:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK

A0A6J1HQF6 zinc finger matrin-type protein 2

3.0e-89

91.79

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Query:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
        AAGVDNTFRRKFDREEYLERARDREKQ        LKGPPVQRKPLKHRDYEVDL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK
Subjt:  AAGVDNTFRRKFDREEYLERARDREKQ-VGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKK

Query:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK
        HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEE+R+R+RRERKKE+KKEKAAEEEPE+DPDVAAMMGFGGFRSSKK
Subjt:  HQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK

SwissProt top hits

e value

%identity

Alignment

P34670 Putative zinc finger matrin-type protein snu-23

7.4e-29

37.31

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Query:  RRKFDREEYLERARDR---EKQVGAFGIYLK---GPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQR
        RR +D +EY   A+ R   EK+     +  K    P V+R+ L+ R+Y+VDL+S++GK+ V+T   P ++  G+YC VC+CVVKDS N+LDHINGK HQR
Subjt:  RRKFDREEYLERARDR---EKQVGAFGIYLK---GPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQR

Query:  ALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQ------DLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPE---IDPDVAAMMGFGGFRSSK
         +GMSM+ +++++  V+ERF+++K +K       Q      D++E   +    +++++   R+RK++ +K++  +++ +   +DP++ AMMGF GF +SK
Subjt:  ALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQ------DLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPE---IDPDVAAMMGFGGFRSSK

Query:  K
        +
Subjt:  K

Q96NC0 Zinc finger matrin-type protein 2

8.5e-41

51.56

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Query:  FRRKFDREEYLERA-----RDREKQVGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQR
        FRRK+D++EY + A      +REK+ G         PV+R+ L+HRDY+VDLES+LGKT V+T   P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR
Subjt:  FRRKFDREEYLERA-----RDREKQVGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQR

Query:  ALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK
         LGMSMRVER++L+QV++RFEV  K+K      + D EER+ + ++EEE+ +  ++E++KEKK+    +   E D ++AA+MGF GF S+KK
Subjt:  ALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK

Q9CPW7 Zinc finger matrin-type protein 2

8.5e-41

51.56

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Query:  FRRKFDREEYLERA-----RDREKQVGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQR
        FRRK+D++EY + A      +REK+ G         PV+R+ L+HRDY+VDLES+LGKT V+T   P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR
Subjt:  FRRKFDREEYLERA-----RDREKQVGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQR

Query:  ALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK
         LGMSMRVER++L+QV++RFEV  K+K      + D EER+ + ++EEE+ +  ++E++KEKK+    +   E D ++AA+MGF GF S+KK
Subjt:  ALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK

Arabidopsis top hits

e value

%identity

Alignment

AT3G05760.1 C2H2 and C2HC zinc fingers superfamily protein

1.6e-79

81.35

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Query:  GVDNTFRRKFDREEYLERARDRE-KQVGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQ
        GVDNTFR+KFD EE+ ERAR+RE K+        KGPPVQR PLKHRDY VDLESRLGKTQVVTPVAPLSQQAGY+C VC+CVVKDSANYLDHINGKKHQ
Subjt:  GVDNTFRRKFDREEYLERARDRE-KQVGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQ

Query:  RALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK
        RALGMSMRVER+SLEQVQERFEVLKKRK PG+FTEQDL+ERI KQQ+EEEE +RQRRE+KKEKKK K  EEEPE+DP+VA MMGFGGF SSKK
Subjt:  RALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK

AT3G05760.2 C2H2 and C2HC zinc fingers superfamily protein

4.2e-59

82.01

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Query:  GVDNTFRRKFDREEYLERARDRE-KQVGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQ
        GVDNTFR+KFD EE+ ERAR+RE K+        KGPPVQR PLKHRDY VDLESRLGKTQVVTPVAPLSQQAGY+C VC+CVVKDSANYLDHINGKKHQ
Subjt:  GVDNTFRRKFDREEYLERARDRE-KQVGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQ

Query:  RALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLE
        RALGMSMRVER+SLEQVQERFEVLKKRK PG+FTEQ+ E
Subjt:  RALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLE

Sequences

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CDS sequence

Show/hide CDS sequence

GCGGCTGGAGTTGATAACACCTTCAGAAGGAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGTGACCGTGAAAAACAGGTTGGGGCTTTTGGAATTTATCTGAAAGG
TCCACCAGTGCAGAGAAAACCATTGAAACATAGAGATTATGAGGTAGACCTCGAGTCCCGCTTGGGAAAGACTCAGGTTGTGACTCCAGTTGCACCTCTAAGCCAGCAGG
CTGGATACTACTGTTCCGTTTGCGAATGTGTGGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTC
GAACGGGCATCTCTGGAGCAGGTGCAGGAGCGGTTTGAAGTTCTTAAGAAGAGAAAAACGCCTGGAAGCTTCACAGAGCAAGATCTTGAAGAGCGTATAGTAAAGCAGCA
ACAAGAAGAAGAAGAACGGAGACGCCAGCGTCGAGAAAGGAAGAAAGAGAAGAAGAAAGAGAAGGCAGCAGAAGAGGAACCCGAAATTGATCCCGACGTTGCGGCAATGA
TGGGATTCGGGGGCTTCCGTTCATCCAAGAAG

mRNA sequence

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Protein sequence

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AAGVDNTFRRKFDREEYLERARDREKQVGAFGIYLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRV
ERASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEEEPEIDPDVAAMMGFGGFRSSKK

MS007267 (gene) of Bitter gourd (TR) v1 genome