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MS007292 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007292
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box protein At5g49610-like
Genome locationscaffold25:2065336..2065865
RNA-Seq ExpressionMS007292
SyntenyMS007292
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR013187 - F-box associated domain, type 3
IPR017451 - F-box associated interaction domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043777.1 F-box protein [Cucumis melo var. makuwa]8.8e-1838.64Show/hide
Query:  VSACGLAHWLLSDET-ILTFDFYTESCSFIA--------RNHDDFDH----RVKLAQYEGKLAMMVQGTRVEA-TEVWVMENY-KKRIWTKKLDLAMEMP
        V A GLAHW   D+T I  FDFY+E+ S IA        +N+    H     ++L +YEGKL ++ +  +    TE+WVMENY KK++W KKLD +  MP
Subjt:  VSACGLAHWLLSDET-ILTFDFYTESCSFIA--------RNHDDFDH----RVKLAQYEGKLAMMVQGTRVEA-TEVWVMENY-KKRIWTKKLDLAMEMP

Query:  RAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCSDIFPFLLDFEPCNFF-GNRRLNPQTVVKILRKH
          FY SD+ +  L  ++    F N   G   Y   +        +FPFL DFE  NF    R + P+ V KILR++
Subjt:  RAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCSDIFPFLLDFEPCNFF-GNRRLNPQTVVKILRKH

KAG6580773.1 F-box protein, partial [Cucurbita argyrosperma subsp. sororia]4.1e-1536.63Show/hide
Query:  GLAHWLLSDE-TILTFDFYTESCSFIA-------------RNHDDFDHRVKLAQYEGKLAMMVQGTRVEA--TEVWVMENYKKRIWTKKLDLAMEMPRAF
        GLAHW   DE +IL FDF +E+ S  A             R         KL +Y+GKL ++ + +   A   E+WVME+YK+R+WTKK +  +  P A 
Subjt:  GLAHWLLSDE-TILTFDFYTESCSFIA-------------RNHDDFDHRVKLAQYEGKLAMMVQGTRVEA--TEVWVMENYKKRIWTKKLDLAMEMPRAF

Query:  YSSDVVVSHLFKE-TKFYNFVHGGCVYSPMQWPMYRCS--DIFPFLLDFEPCNFF--GNRRLNPQTVVKILR
        Y SD +++    E  KF N   G   Y  ++   Y  S   +FPF  DFEP +++    R  NP TV K+LR
Subjt:  YSSDVVVSHLFKE-TKFYNFVHGGCVYSPMQWPMYRCS--DIFPFLLDFEPCNFF--GNRRLNPQTVVKILR

TYK25356.1 F-box protein [Cucumis melo var. makuwa]4.0e-1838.64Show/hide
Query:  VSACGLAHWLLSDET-ILTFDFYTESCSFIA--------RNHDDFDH----RVKLAQYEGKLAMMVQGTRVEA-TEVWVMENY-KKRIWTKKLDLAMEMP
        V A GLAHW   D+T I  FDFY+E+ S IA        +N+    H     ++L +YEGKL ++ +  +    TE+WVMENY KK++W KKLD +  MP
Subjt:  VSACGLAHWLLSDET-ILTFDFYTESCSFIA--------RNHDDFDH----RVKLAQYEGKLAMMVQGTRVEA-TEVWVMENY-KKRIWTKKLDLAMEMP

Query:  RAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCSDIFPFLLDFEPCNFF-GNRRLNPQTVVKILRKH
          FY SD+ +  L  ++    F N   G   Y  ++        +FPFL DFE  NF    R + P+ V KILR++
Subjt:  RAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCSDIFPFLLDFEPCNFF-GNRRLNPQTVVKILRKH

XP_008443600.1 PREDICTED: F-box protein At5g49610-like [Cucumis melo]8.8e-1838.64Show/hide
Query:  VSACGLAHWLLSDET-ILTFDFYTESCSFIA--------RNHDDFDH----RVKLAQYEGKLAMMVQGTRVEA-TEVWVMENY-KKRIWTKKLDLAMEMP
        V A GLAHW   D+T I  FDFY+E+ S IA        +N+    H     ++L +YEGKL ++ +  +    TE+WVMENY KK++W KKLD +  MP
Subjt:  VSACGLAHWLLSDET-ILTFDFYTESCSFIA--------RNHDDFDH----RVKLAQYEGKLAMMVQGTRVEA-TEVWVMENY-KKRIWTKKLDLAMEMP

Query:  RAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCSDIFPFLLDFEPCNFF-GNRRLNPQTVVKILRKH
          FY SD+ +  L  ++    F N   G   Y   +        +FPFL DFE  NF    R + P+ V KILR++
Subjt:  RAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCSDIFPFLLDFEPCNFF-GNRRLNPQTVVKILRKH

XP_022154661.1 F-box protein At5g49610-like [Momordica charantia]2.3e-5863.64Show/hide
Query:  GDIAFHSPNVSACGLAHWLLSDETILTFDFYTESCSFIA-------RNHDDFDHRVKLAQYEGKLAMMVQGTRVEATEVWVMENYKKRIWTKKLDLAMEM
        G I + SPNVSACG AHWLL D+TIL FDF  E+ SFIA       ++     HRV LAQYEGKLA+M+Q T+V+ATEVWVME Y+KRIWTK+LDLAMEM
Subjt:  GDIAFHSPNVSACGLAHWLLSDETILTFDFYTESCSFIA-------RNHDDFDHRVKLAQYEGKLAMMVQGTRVEATEVWVMENYKKRIWTKKLDLAMEM

Query:  PRAFYSSDVVVS-HLFKETKFYNFVHGGCVYSPMQWPMYRCSDIFPFLLDFEPCNFFGN---RRLNPQTVVKILRKHLLAIQNKENI
        P AFYSSDV ++  +F E KF NFVHGGC YSP +  MY C D+FPFL DFEPCN F     RRLNP+T++KILRK LLAIQN  ++
Subjt:  PRAFYSSDVVVS-HLFKETKFYNFVHGGCVYSPMQWPMYRCSDIFPFLLDFEPCNFFGN---RRLNPQTVVKILRKHLLAIQNKENI

TrEMBL top hitse value%identityAlignment
A0A5A7TPP2 F-box protein4.3e-1838.64Show/hide
Query:  VSACGLAHWLLSDET-ILTFDFYTESCSFIA--------RNHDDFDH----RVKLAQYEGKLAMMVQGTRVEA-TEVWVMENY-KKRIWTKKLDLAMEMP
        V A GLAHW   D+T I  FDFY+E+ S IA        +N+    H     ++L +YEGKL ++ +  +    TE+WVMENY KK++W KKLD +  MP
Subjt:  VSACGLAHWLLSDET-ILTFDFYTESCSFIA--------RNHDDFDH----RVKLAQYEGKLAMMVQGTRVEA-TEVWVMENY-KKRIWTKKLDLAMEMP

Query:  RAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCSDIFPFLLDFEPCNFF-GNRRLNPQTVVKILRKH
          FY SD+ +  L  ++    F N   G   Y   +        +FPFL DFE  NF    R + P+ V KILR++
Subjt:  RAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCSDIFPFLLDFEPCNFF-GNRRLNPQTVVKILRKH

A0A5D3DNY0 F-box protein1.9e-1838.64Show/hide
Query:  VSACGLAHWLLSDET-ILTFDFYTESCSFIA--------RNHDDFDH----RVKLAQYEGKLAMMVQGTRVEA-TEVWVMENY-KKRIWTKKLDLAMEMP
        V A GLAHW   D+T I  FDFY+E+ S IA        +N+    H     ++L +YEGKL ++ +  +    TE+WVMENY KK++W KKLD +  MP
Subjt:  VSACGLAHWLLSDET-ILTFDFYTESCSFIA--------RNHDDFDH----RVKLAQYEGKLAMMVQGTRVEA-TEVWVMENY-KKRIWTKKLDLAMEMP

Query:  RAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCSDIFPFLLDFEPCNFF-GNRRLNPQTVVKILRKH
          FY SD+ +  L  ++    F N   G   Y  ++        +FPFL DFE  NF    R + P+ V KILR++
Subjt:  RAFYSSDVVVSHLFKETK---FYNFVHGGCVYSPMQWPMYRCSDIFPFLLDFEPCNFF-GNRRLNPQTVVKILRKH

A0A6J1DPD6 F-box protein At5g49610-like1.1e-5863.64Show/hide
Query:  GDIAFHSPNVSACGLAHWLLSDETILTFDFYTESCSFIA-------RNHDDFDHRVKLAQYEGKLAMMVQGTRVEATEVWVMENYKKRIWTKKLDLAMEM
        G I + SPNVSACG AHWLL D+TIL FDF  E+ SFIA       ++     HRV LAQYEGKLA+M+Q T+V+ATEVWVME Y+KRIWTK+LDLAMEM
Subjt:  GDIAFHSPNVSACGLAHWLLSDETILTFDFYTESCSFIA-------RNHDDFDHRVKLAQYEGKLAMMVQGTRVEATEVWVMENYKKRIWTKKLDLAMEM

Query:  PRAFYSSDVVVS-HLFKETKFYNFVHGGCVYSPMQWPMYRCSDIFPFLLDFEPCNFFGN---RRLNPQTVVKILRKHLLAIQNKENI
        P AFYSSDV ++  +F E KF NFVHGGC YSP +  MY C D+FPFL DFEPCN F     RRLNP+T++KILRK LLAIQN  ++
Subjt:  PRAFYSSDVVVS-HLFKETKFYNFVHGGCVYSPMQWPMYRCSDIFPFLLDFEPCNFFGN---RRLNPQTVVKILRKHLLAIQNKENI

A0A6J1F395 F-box protein At5g49610-like5.8e-1536.05Show/hide
Query:  GLAHWLLSDE-TILTFDFYTESCSFIA-------------RNHDDFDHRVKLAQYEGKLAMMVQGTRVEA--TEVWVMENYKKRIWTKKLDLAMEMPRAF
        GLAHW   DE +IL FDF +E+ S  A             R         KL +Y+GKL ++ + +   A   E+WVME+YK+R+WTKK +  +  P A 
Subjt:  GLAHWLLSDE-TILTFDFYTESCSFIA-------------RNHDDFDHRVKLAQYEGKLAMMVQGTRVEA--TEVWVMENYKKRIWTKKLDLAMEMPRAF

Query:  YSSDVVVSHLFKE-TKFYNFVHGGCVYSPMQWPMYRCS--DIFPFLLDFEPCNFF--GNRRLNPQTVVKILR
        Y SD +++    E  KF N   G   Y  ++   Y  S   +FPF  DFEP +++    R  NP TV ++LR
Subjt:  YSSDVVVSHLFKE-TKFYNFVHGGCVYSPMQWPMYRCS--DIFPFLLDFEPCNFF--GNRRLNPQTVVKILR

A0A6J1J214 F-box protein At5g49610-like4.4e-1536.99Show/hide
Query:  GLAHWLLSDE-TILTFDFYTESCSFIA-------------RNHDDFDHRVKLAQYEGKLAMMVQGTRVEA--TEVWVMENYKKRIWTKKLDLAMEMPRAF
        GLAHW   DE +IL FDF +E+ S IA             R         KL +Y+GKL ++ +     A   E+WVME+YK+R+WTKK +     P A 
Subjt:  GLAHWLLSDE-TILTFDFYTESCSFIA-------------RNHDDFDHRVKLAQYEGKLAMMVQGTRVEA--TEVWVMENYKKRIWTKKLDLAMEMPRAF

Query:  YSSDVVVSHLFKE-TKFYNFVHGGCVYSPMQWPMYRCSD--IFPFLLDFEPCNFF--GNRRLNPQTVVKILRK
        Y SD +++    E  KF N   G   Y  ++   Y  S+  +FPF  DFEP +F+    R  NP  V K+LR+
Subjt:  YSSDVVVSHLFKE-TKFYNFVHGGCVYSPMQWPMYRCSD--IFPFLLDFEPCNFF--GNRRLNPQTVVKILRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGCGACATAGCCTTTCACTCTCCTAATGTTTCTGCTTGTGGCTTGGCTCATTGGCTCCTTAGCGACGAAACCATACTCACTTTCGACTTTTACACCGAAAGCTGCTCCTT
TATCGCCCGCAACCACGACGACTTTGATCATCGAGTAAAGCTTGCACAGTACGAAGGAAAACTCGCGATGATGGTGCAGGGGACGAGGGTGGAAGCGACCGAGGTATGGG
TGATGGAGAATTACAAGAAGAGAATATGGACCAAAAAGTTAGATCTGGCCATGGAGATGCCTAGGGCATTTTACTCCTCTGATGTTGTGGTGAGCCATCTGTTTAAGGAG
ACCAAGTTCTATAATTTCGTGCATGGAGGTTGCGTTTATAGCCCTATGCAATGGCCAATGTATAGGTGTTCCGATATTTTTCCTTTCTTGTTGGATTTTGAGCCATGCAA
TTTCTTCGGCAATCGACGTCTCAACCCTCAAACCGTGGTCAAGATCCTTCGAAAACATTTGCTTGCCATCCAAAATAAGGAAAATATT
mRNA sequenceShow/hide mRNA sequence
GGCGACATAGCCTTTCACTCTCCTAATGTTTCTGCTTGTGGCTTGGCTCATTGGCTCCTTAGCGACGAAACCATACTCACTTTCGACTTTTACACCGAAAGCTGCTCCTT
TATCGCCCGCAACCACGACGACTTTGATCATCGAGTAAAGCTTGCACAGTACGAAGGAAAACTCGCGATGATGGTGCAGGGGACGAGGGTGGAAGCGACCGAGGTATGGG
TGATGGAGAATTACAAGAAGAGAATATGGACCAAAAAGTTAGATCTGGCCATGGAGATGCCTAGGGCATTTTACTCCTCTGATGTTGTGGTGAGCCATCTGTTTAAGGAG
ACCAAGTTCTATAATTTCGTGCATGGAGGTTGCGTTTATAGCCCTATGCAATGGCCAATGTATAGGTGTTCCGATATTTTTCCTTTCTTGTTGGATTTTGAGCCATGCAA
TTTCTTCGGCAATCGACGTCTCAACCCTCAAACCGTGGTCAAGATCCTTCGAAAACATTTGCTTGCCATCCAAAATAAGGAAAATATT
Protein sequenceShow/hide protein sequence
GDIAFHSPNVSACGLAHWLLSDETILTFDFYTESCSFIARNHDDFDHRVKLAQYEGKLAMMVQGTRVEATEVWVMENYKKRIWTKKLDLAMEMPRAFYSSDVVVSHLFKE
TKFYNFVHGGCVYSPMQWPMYRCSDIFPFLLDFEPCNFFGNRRLNPQTVVKILRKHLLAIQNKENI