CuGenDBv2

Gene ID	MS007353
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	scaffold25:2636415..2636891
RNA-Seq Expression	MS007353
Synteny	MS007353
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

5.1e-25

33.55

Show/hide

Query:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF
        K  +V E W+     W+    R L + E+  W    ++ P P    G   P W L+ + +F   S+K  +    IS  + H N + TLW +  PKKCKFF
Subjt:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF

Query:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR
        +W ++H  +NT ++LQ RLP+  +S +WC +C  + E ++H+F+H P++  LW +
Subjt:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.3e-24

33.55

Show/hide

Query:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF
        K  +V + W+     WN    R L + E+  W    ++ P P    G   P W L+ + +F   SIK  L     S  + H + + TLW +  PKKCKFF
Subjt:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF

Query:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR
        +W ++H  +NT ++LQ RLP+  +S +WC +C  + E ++H+F+H P++  LW +
Subjt:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.6e-24

32.9

Show/hide

Query:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF
        K  +V + W+     W+    R L + E+  W    ++ P P    G   P W L+ + +F   S+K  L    +S  + H N + TLW +  PKKCKFF
Subjt:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF

Query:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR
        +W ++H  +NT ++LQ RLP+  +S +WC +C  + E ++H+F+H P++  LW +
Subjt:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

3.3e-24

33.55

Show/hide

Query:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF
        K  +V + W+     WN    R L + E+  W    ++ P P    G   P W L+ + +F   SIK  L     S  + H + + TLW +  PKKCKFF
Subjt:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF

Query:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR
        +W ++H  +NT ++LQ RLP+  +S +WC +C  + E ++H+F+H P++  LW +
Subjt:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]

2.6e-24

32.9

Show/hide

Query:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF
        K  +V + W+     W+    R L + E+  W    ++ P P    G   P W L+ + +F   S+K  L    +S  + H N + TLW +  PKKCKFF
Subjt:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF

Query:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR
        +W ++H  +NT ++LQ RLP+  +S +WC +C  + E ++H+F+H P++  LW +
Subjt:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein

2.5e-25

33.55

Show/hide

Query:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF
        K  +V E W+     W+    R L + E+  W    ++ P P    G   P W L+ + +F   S+K  +    IS  + H N + TLW +  PKKCKFF
Subjt:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF

Query:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR
        +W ++H  +NT ++LQ RLP+  +S +WC +C  + E ++H+F+H P++  LW +
Subjt:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein

1.6e-24

33.55

Show/hide

Query:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF
        K  +V + W+     WN    R L + E+  W    ++ P P    G   P W L+ + +F   SIK  L     S  + H + + TLW +  PKKCKFF
Subjt:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF

Query:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR
        +W ++H  +NT ++LQ RLP+  +S +WC +C  + E ++H+F+H P++  LW +
Subjt:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein

1.6e-24

33.55

Show/hide

Query:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF
        K  +V + W+     WN    R L + E+  W    ++ P P    G   P W L+ + +F   SIK  L     S  + H + + TLW +  PKKCKFF
Subjt:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF

Query:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR
        +W ++H  +NT ++LQ RLP+  +S +WC +C  + E ++H+F+H P++  LW +
Subjt:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein

1.2e-24

32.9

Show/hide

Query:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF
        K  +V + W+     W+    R L + E+  W    ++ P P    G   P W L+ + +F   S+K  L    +S  + H N + TLW +  PKKCKFF
Subjt:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF

Query:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR
        +W ++H  +NT ++LQ RLP+  +S +WC +C  + E ++H+F+H P++  LW +
Subjt:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein

1.2e-24

32.9

Show/hide

Query:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF
        K  +V + W+     W+    R L + E+  W    ++ P P    G   P W L+ + +F   S+K  L    +S  + H N + TLW +  PKKCKFF
Subjt:  KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPH-HQNFFSTLWNLLIPKKCKFF

Query:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR
        +W ++H  +NT ++LQ RLP+  +S +WC +C  + E ++H+F+H P++  LW +
Subjt:  LWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHR

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

3.7e-10

30.56

Show/hide

Query:  KDSPKWTLSIDGLFSVKSIKGCLRPKIISHPHHQNFFSTLWNLLIPKKCKFFLWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPF
        +D   W  S DG FSV+S    L    +  P+  +FF+ LW + +P++ K FLW + ++A+ T+ +   R  H+  S + C +CK   E++ H+    P 
Subjt:  KDSPKWTLSIDGLFSVKSIKGCLRPKIISHPHHQNFFSTLWNLLIPKKCKFFLWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPF

Query:  TASLWHRL
           +W R+
Subjt:  TASLWHRL

Arabidopsis top hits

e value

%identity

Alignment

AT3G09510.1 Ribonuclease H-like superfamily protein

1.3e-05

36.71

Show/hide

Query:  ISHPHHQNFFST-LWNLLIPKKCKFFLWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLW
        I+ PH      T +WNL I  K K FLW  L +AL T  +L  R   I  S   CP C   +E+++H     PF    W
Subjt:  ISHPHHQNFFST-LWNLLIPKKCKFFLWCILHRALNTQNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLW

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

AAAAATATGACAGTCTATGAAGCTTGGGATATGGACTTTGGTTGTTGGAATTTCGCTCCGAGAAGATCGTTATTCGAGAGGGAACAAGCACAATGGTCTCTCCGATCCTC
TACTTTTCCCGTTCCGGCGAATTTTCATGGGAAAGATTCTCCCAAATGGACTCTTTCCATTGATGGTCTTTTTTCAGTGAAGTCAATTAAAGGCTGCCTTCGGCCCAAGA
TTATCTCTCATCCCCACCACCAAAACTTCTTCTCCACCTTATGGAATTTACTCATCCCGAAGAAGTGTAAATTTTTTCTTTGGTGTATTCTTCATCGAGCTCTAAACACA
CAGAACAAGCTTCAGAATCGTCTTCCACATATATACATCAGTCTCAGTTGGTGTCCACTATGCAAATCGGCATCTGAAACTTTGGACCATATTTTCCTTCATTTCCCTTT
TACTGCAAGTTTATGGCATCGTCTCTTCTACATTTTT

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

KNMTVYEAWDMDFGCWNFAPRRSLFEREQAQWSLRSSTFPVPANFHGKDSPKWTLSIDGLFSVKSIKGCLRPKIISHPHHQNFFSTLWNLLIPKKCKFFLWCILHRALNT
QNKLQNRLPHIYISLSWCPLCKSASETLDHIFLHFPFTASLWHRLFYIF

MS007353 (gene) of Bitter gourd (TR) v1 genome