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MS007461 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007461
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold447:185681..186043
RNA-Seq ExpressionMS007461
SyntenyMS007461
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RLM58814.1 hypothetical protein C2845_PM18G04280 [Panicum miliaceum]8.2e-0739.73Show/hide
Query:  DQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRMA
        +Q  +S+W PPP GWVKFNVD +  +     G+G++ RD   Q+I    R        + AE  A LEG R+A
Subjt:  DQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRMA

XP_022141766.1 uncharacterized protein LOC111012047 [Momordica charantia]2.8e-0735.4Show/hide
Query:  ISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAE
        ++D    S+WI +Y  E     R ++ +     C         + W PP  G VK NVDAA      R GVG++ RD++  I+AA   S  V + PL AE
Subjt:  ISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAE

Query:  TFAFLEGIRMAER
          A  E +R+AER
Subjt:  TFAFLEGIRMAER

XP_022142956.1 uncharacterized protein LOC111012950 [Momordica charantia]1.0e-1261.29Show/hide
Query:  TGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRMAE
        TGW+K NVD ACKK   RT +GIV R+EK QI+AA  R  E YHDPL AE+ A LEG+R+A+
Subjt:  TGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRMAE

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]2.6e-2150.43Show/hide
Query:  NAIKAKNQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEV
        NAI+ + QI DAK+RS+WIL+YV++F+  +  S G    Q   S+ D+  E+ W PPP GW+K NVDAACKK   RTG+GIV R+EK QI+AA       
Subjt:  NAIKAKNQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEV

Query:  YHDPLTAETFAFLEG
         HDPL AE+ A  +G
Subjt:  YHDPLTAETFAFLEG

XP_022154440.1 uncharacterized protein LOC111021711 [Momordica charantia]1.1e-1135.96Show/hide
Query:  NQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLT
        N + D    ++  + Y       +R  H  +     NSN    + + W PP   WVK NVD ACK S SRTG+G+V +++K +II A  R  +V+++PL 
Subjt:  NQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLT

Query:  AETFAFLEGIRMAE
         ET A LEG+ + +
Subjt:  AETFAFLEGIRMAE

TrEMBL top hitse value%identityAlignment
A0A3L6PIV1 RNase H domain-containing protein4.0e-0739.73Show/hide
Query:  DQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRMA
        +Q  +S+W PPP GWVKFNVD +  +     G+G++ RD   Q+I    R        + AE  A LEG R+A
Subjt:  DQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRMA

A0A6J1CK80 uncharacterized protein LOC1110120471.4e-0735.4Show/hide
Query:  ISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAE
        ++D    S+WI +Y  E     R ++ +     C         + W PP  G VK NVDAA      R GVG++ RD++  I+AA   S  V + PL AE
Subjt:  ISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAE

Query:  TFAFLEGIRMAER
          A  E +R+AER
Subjt:  TFAFLEGIRMAER

A0A6J1CNR4 uncharacterized protein LOC1110129504.8e-1361.29Show/hide
Query:  TGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRMAE
        TGW+K NVD ACKK   RT +GIV R+EK QI+AA  R  E YHDPL AE+ A LEG+R+A+
Subjt:  TGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRMAE

A0A6J1CTE3 uncharacterized protein LOC1110145781.3e-2150.43Show/hide
Query:  NAIKAKNQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEV
        NAI+ + QI DAK+RS+WIL+YV++F+  +  S G    Q   S+ D+  E+ W PPP GW+K NVDAACKK   RTG+GIV R+EK QI+AA       
Subjt:  NAIKAKNQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEV

Query:  YHDPLTAETFAFLEG
         HDPL AE+ A  +G
Subjt:  YHDPLTAETFAFLEG

A0A6J1DJL6 uncharacterized protein LOC1110217115.4e-1235.96Show/hide
Query:  NQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLT
        N + D    ++  + Y       +R  H  +     NSN    + + W PP   WVK NVD ACK S SRTG+G+V +++K +II A  R  +V+++PL 
Subjt:  NQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLT

Query:  AETFAFLEGIRMAE
         ET A LEG+ + +
Subjt:  AETFAFLEGIRMAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein9.0e-0425Show/hide
Query:  KAKNQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNS-NADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYH
        +A+  I DA   +EW+        ++N  +  ++ + A N     + + S+W PPP GWVK N D+   +    T  G   R+    I+       +   
Subjt:  KAKNQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNS-NADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYH

Query:  DPLTAETFAFLEGIRM
          L AE   FL  +++
Subjt:  DPLTAETFAFLEGIRM

AT4G29090.1 Ribonuclease H-like superfamily protein5.7e-0638.67Show/hide
Query:  QINES---RWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRMA
        Q+N S   RW PPP  WVK N DA   +   R G+G V R+EK ++     R+       L AE    LE +R A
Subjt:  QINES---RWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETFAFLEGIRMA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACGCGATTAAAGCTAAGAATCAAATTTCAGATGCTAAGTTGAGAAGTGAATGGATCTTATCTTACGTGAAGGAGTTTAAAGACAGTAACAGATTGTCCCATGGCAGTTC
CTACTATCAAGCTTGCAACAGCAATGCAGATCAAATTAATGAGAGTCGTTGGTTGCCCCCTCCAACTGGTTGGGTGAAGTTTAATGTGGACGCTGCCTGCAAAAAATCCC
TCTCTAGAACTGGTGTGGGTATTGTGGGCAGAGATGAAAAGGAACAAATTATAGCAGCAAATTTTCGAAGTTTTGAGGTTTACCATGATCCTTTGACGGCAGAAACTTTT
GCTTTTCTTGAAGGTATTCGCATGGCTGAGCGT
mRNA sequenceShow/hide mRNA sequence
AACGCGATTAAAGCTAAGAATCAAATTTCAGATGCTAAGTTGAGAAGTGAATGGATCTTATCTTACGTGAAGGAGTTTAAAGACAGTAACAGATTGTCCCATGGCAGTTC
CTACTATCAAGCTTGCAACAGCAATGCAGATCAAATTAATGAGAGTCGTTGGTTGCCCCCTCCAACTGGTTGGGTGAAGTTTAATGTGGACGCTGCCTGCAAAAAATCCC
TCTCTAGAACTGGTGTGGGTATTGTGGGCAGAGATGAAAAGGAACAAATTATAGCAGCAAATTTTCGAAGTTTTGAGGTTTACCATGATCCTTTGACGGCAGAAACTTTT
GCTTTTCTTGAAGGTATTCGCATGGCTGAGCGT
Protein sequenceShow/hide protein sequence
NAIKAKNQISDAKLRSEWILSYVKEFKDSNRLSHGSSYYQACNSNADQINESRWLPPPTGWVKFNVDAACKKSLSRTGVGIVGRDEKEQIIAANFRSFEVYHDPLTAETF
AFLEGIRMAER