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MS007546 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007546
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSWIM-type domain-containing protein
Genome locationscaffold401:21920..22135
RNA-Seq ExpressionMS007546
SyntenyMS007546
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032265.1 MuDRA-like transposase [Cucumis melo var. makuwa]2.4e-1458.73Show/hide
Query:  FQVDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYY
        F V+P++ VEFQV+    NFLV L   SC+C  WDL+EIPCAHAL VIC ++LNPY++V +YY
Subjt:  FQVDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYY
TYK23827.1 MuDR family transposase [Cucumis melo var. makuwa]2.4e-1463.08Show/hide
Query:  FQVDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYYLS
        F V+ IN+VEFQVI     F+V L  KSCTCRVWDL+EIPCAHALAV+   ++N YS+VS+Y+LS
Subjt:  FQVDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYYLS
XP_022155934.1 uncharacterized protein LOC111022933 [Momordica charantia]6.1e-2693.65Show/hide
Query:  VDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYYLS
        VD INNVEFQVIHKA+NFLVNLGSKSCTCRVWDLEEIPCAHALAVIC  DLNPYSYVSEYYLS
Subjt:  VDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYYLS
XP_022156698.1 uncharacterized protein LOC111023543 [Momordica charantia]6.6e-2898.41Show/hide
Query:  VDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYYLS
        VDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLN YSYVSEYYLS
Subjt:  VDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYYLS
XP_038880504.1 uncharacterized protein LOC120072166 [Benincasa hispida]4.9e-1563.49Show/hide
Query:  FQVDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYY
        F+VDPINN E++VI   ++FLVNL  KSC+CRVWDL EIPCAHA AVIC ++L+ Y++V +YY
Subjt:  FQVDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYY
TrEMBL top hitse value%identityAlignment
A0A1S4DWH2 uncharacterized protein LOC1079908622.0e-1460.32Show/hide
Query:  FQVDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYY
        F V+P++ VEFQV+    NFLV L   SC+C  WDLEEIP AHAL VIC ++LNPY++VS+YY
Subjt:  FQVDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYY
A0A5A7SST5 MuDRA-like transposase1.2e-1458.73Show/hide
Query:  FQVDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYY
        F V+P++ VEFQV+    NFLV L   SC+C  WDL+EIPCAHAL VIC ++LNPY++V +YY
Subjt:  FQVDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYY
A0A5D3DJR8 MuDR family transposase1.2e-1463.08Show/hide
Query:  FQVDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYYLS
        F V+ IN+VEFQVI     F+V L  KSCTCRVWDL+EIPCAHALAV+   ++N YS+VS+Y+LS
Subjt:  FQVDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYYLS
A0A6J1DRB5 uncharacterized protein LOC1110235433.2e-2898.41Show/hide
Query:  VDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYYLS
        VDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLN YSYVSEYYLS
Subjt:  VDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYYLS
A0A6J1DRS7 uncharacterized protein LOC1110229333.0e-2693.65Show/hide
Query:  VDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYYLS
        VD INNVEFQVIHKA+NFLVNLGSKSCTCRVWDLEEIPCAHALAVIC  DLNPYSYVSEYYLS
Subjt:  VDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYYLS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49920.1 MuDR family transposase1.9e-0439.53Show/hide
Query:  LVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYY
        +V L   +CTC  +   + PC HALAV   + +NP  YV + Y
Subjt:  LVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYY
AT1G64255.1 MuDR family transposase7.5e-0636.23Show/hide
Query:  IFFFFQVDPINNVEFQVIHKAD--NFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYY
        + + + V P++N  FQV    D    +V L   SCTC  +   + PC HALAV  ++  NP  YV + Y
Subjt:  IFFFFQVDPINNVEFQVIHKAD--NFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYY
AT1G64260.1 MuDR family transposase7.5e-0641.3Show/hide
Query:  DNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYY
        + ++V L   +CTCR +   + PC HALAV  ++ +NP  YV E Y
Subjt:  DNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTATTATTATTTTTTTCTTTTTTCAGGTTGATCCTATCAACAACGTTGAATTTCAAGTAATTCATAAAGCGGATAATTTTTTGGTAAATTTGGGTTCTAAAAGTTGCAC
TTGTCGTGTTTGGGATTTGGAAGAAATTCCTTGTGCTCATGCACTTGCAGTTATTTGTAGGATTGATTTGAATCCTTATTCATATGTGTCTGAGTATTATCTGTCT
mRNA sequenceShow/hide mRNA sequence
ATTATTATTATTTTTTTCTTTTTTCAGGTTGATCCTATCAACAACGTTGAATTTCAAGTAATTCATAAAGCGGATAATTTTTTGGTAAATTTGGGTTCTAAAAGTTGCAC
TTGTCGTGTTTGGGATTTGGAAGAAATTCCTTGTGCTCATGCACTTGCAGTTATTTGTAGGATTGATTTGAATCCTTATTCATATGTGTCTGAGTATTATCTGTCT
Protein sequenceShow/hide protein sequence
IIIIFFFFQVDPINNVEFQVIHKADNFLVNLGSKSCTCRVWDLEEIPCAHALAVICRIDLNPYSYVSEYYLS