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MS007549 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007549
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 reverse transcriptase-like
Genome locationscaffold401:55149..55353
RNA-Seq ExpressionMS007549
SyntenyMS007549
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0004519 - endonuclease activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN62611.1 hypothetical protein VITISV_033248 [Vitis vinifera]4.8e-1250.72Show/hide
Query:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS
        RE FW +L  I   ++  WCIGGDFN+IR+  ER  GGR+S ++++F+ +I ELEL ++PL  G FTWS
Subjt:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS

RVW14907.1 LINE-1 reverse transcriptase-like [Vitis vinifera]4.8e-1250.72Show/hide
Query:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS
        RE FW +L  I   ++  WCIGGDFN+IR+  ER  GGR+S ++++F+ +I ELEL ++PL  G FTWS
Subjt:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS

RVW91675.1 LINE-1 reverse transcriptase-like [Vitis vinifera]4.8e-1250.72Show/hide
Query:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS
        RE FW +L  I   ++  WCIGGDFN+IR+  ER  GGR+S ++++F+ +I ELEL ++PL  G FTWS
Subjt:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS

XP_010647578.1 PREDICTED: uncharacterized protein LOC104878673, partial [Vitis vinifera]6.2e-1250.72Show/hide
Query:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS
        RE FW +L  I   ++  WCIGGDFN+IR+  ER  GGR+S ++++F+ +I ELEL ++PL  G FTWS
Subjt:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS

XP_022154822.1 uncharacterized protein LOC111021983 [Momordica charantia]1.3e-1762.32Show/hide
Query:  REYFWTKLHDIACYSGS-WCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS
        R+  W++L DI+ +S   WC+GGDFNV RW  ++SSGGRI+++++KFN IIGEL+L EVPLSNGKFTWS
Subjt:  REYFWTKLHDIACYSGS-WCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS

TrEMBL top hitse value%identityAlignment
A0A438BVI0 LINE-1 reverse transcriptase-like2.3e-1250.72Show/hide
Query:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS
        RE FW +L  I   ++  WCIGGDFN+IR+  ER  GGR+S ++++F+ +I ELEL ++PL  G FTWS
Subjt:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS

A0A438I4P0 LINE-1 reverse transcriptase-like2.3e-1250.72Show/hide
Query:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS
        RE FW +L  I   ++  WCIGGDFN+IR+  ER  GGR+S ++++F+ +I ELEL ++PL  G FTWS
Subjt:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS

A0A6J1DMQ9 uncharacterized protein LOC1110219836.3e-1862.32Show/hide
Query:  REYFWTKLHDIACYSGS-WCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS
        R+  W++L DI+ +S   WC+GGDFNV RW  ++SSGGRI+++++KFN IIGEL+L EVPLSNGKFTWS
Subjt:  REYFWTKLHDIACYSGS-WCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS

A5ALM2 Reverse transcriptase domain-containing protein2.3e-1250.72Show/hide
Query:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS
        RE FW +L  I   ++  WCIGGDFN+IR+  ER  GGR+S ++++F+ +I ELEL ++PL  G FTWS
Subjt:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS

A5AQQ5 DUF4283 domain-containing protein3.0e-1249.28Show/hide
Query:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS
        RE+FW +L  I   ++  WCIGGDFN+IR+  ER  GGR+S +++KF+ +I +L+L ++PL  G FTWS
Subjt:  REYFWTKLHDI-ACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGAGAGTACTTCTGGACAAAACTTCATGACATTGCTTGCTATTCTGGATCTTGGTGCATTGGTGGTGACTTCAATGTTATTAGATGGTTCTTAGAAAGATCTTCTGGTGG
TAGAATTTCAAAGGCCATTAAGAAGTTCAATTCCATCATTGGGGAGTTAGAACTGATGGAGGTTCCCCTATCCAACGGTAAGTTTACATGGTCG
mRNA sequenceShow/hide mRNA sequence
AGAGAGTACTTCTGGACAAAACTTCATGACATTGCTTGCTATTCTGGATCTTGGTGCATTGGTGGTGACTTCAATGTTATTAGATGGTTCTTAGAAAGATCTTCTGGTGG
TAGAATTTCAAAGGCCATTAAGAAGTTCAATTCCATCATTGGGGAGTTAGAACTGATGGAGGTTCCCCTATCCAACGGTAAGTTTACATGGTCG
Protein sequenceShow/hide protein sequence
REYFWTKLHDIACYSGSWCIGGDFNVIRWFLERSSGGRISKAIKKFNSIIGELELMEVPLSNGKFTWS