CuGenDBv2

Gene ID	MS007551
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	sister chromatid cohesion protein SCC4
Genome location	scaffold401:81639..82452
RNA-Seq Expression	MS007551
Synteny	MS007551
Gene Ontology terms	GO:0007064 - mitotic sister chromatid cohesion (biological process) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR019440 - Chromatid cohesion factor MAU2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6607383.1 Sister chromatid cohesion protein SCC4, partial [Cucurbita argyrosperma subsp. sororia]

4.0e-82

95.35

Show/hide

Query:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA
        RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRL 
Subjt:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA

Query:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL
        DAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGPSLGVNLDIPES+GVSVSLPTSSLKL+D+DTGRRGKRKL
Subjt:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL

KAG7037052.1 hypothetical protein SDJN02_00673, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.0e-82

95.35

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Query:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA
        RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRL 
Subjt:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA

Query:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL
        DAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGPSLGVNLDIPES+GVSVSLPTSSLKL+D+DTGRRGKRKL
Subjt:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL

XP_022158435.1 sister chromatid cohesion protein SCC4 [Momordica charantia]

3.0e-85

100

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Query:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA
        RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA
Subjt:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA

Query:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL
        DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL
Subjt:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL

XP_023521217.1 sister chromatid cohesion protein SCC4 isoform X1 [Cucurbita pepo subsp. pepo]

4.0e-82

95.35

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Query:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA
        RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRL 
Subjt:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA

Query:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL
        DAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGPSLGVNLDIPES+GVSVSLPTSSLKL+D+DTGRRGKRKL
Subjt:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL

XP_023524546.1 sister chromatid cohesion protein SCC4-like, partial [Cucurbita pepo subsp. pepo]

4.0e-82

95.35

Show/hide

Query:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA
        RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRL 
Subjt:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA

Query:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL
        DAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGPSLGVNLDIPES+GVSVSLPTSSLKL+D+DTGRRGKRKL
Subjt:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UEF7 MAU2 chromatid cohesion factor-like protein

9.7e-74

90.12

Show/hide

Query:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA
        RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQ KKADDLQ+RL 
Subjt:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA

Query:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL
        DAHSSIHHIELIDKVRLEIQQLK VDIKRA G  SLGV+LDIP S+G SVS  TSSLKL+D+D+GRRGKRK+
Subjt:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL

A0A5D3CHS2 MAU2 chromatid cohesion factor-like protein

9.7e-74

90.12

Show/hide

Query:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA
        RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQ KKADDLQ+RL 
Subjt:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA

Query:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL
        DAHSSIHHIELIDKVRLEIQQLK VDIKRA G  SLGV+LDIP S+G SVS  TSSLKL+D+D+GRRGKRK+
Subjt:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL

A0A6J1DVU1 sister chromatid cohesion protein SCC4

1.4e-85

100

Show/hide

Query:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA
        RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA
Subjt:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA

Query:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL
        DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL
Subjt:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL

A0A6J1GBA4 sister chromatid cohesion protein SCC4

2.0e-82

95.35

Show/hide

Query:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA
        RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRL 
Subjt:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA

Query:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL
        DAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGPSLGVNLDIPES+GVSVSLPTSSLKL+D+DTGRRGKRKL
Subjt:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL

A0A6J1KHQ8 sister chromatid cohesion protein SCC4

5.7e-82

94.77

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Query:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA
        RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKK DDLQKRL 
Subjt:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA

Query:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL
        DAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGPSLGVNLDIPES+GVSVSLPTSSLKL+D+DTGRRGKRKL
Subjt:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL

SwissProt top hits

e value

%identity

Alignment

Q9FGN7 Sister chromatid cohesion protein SCC4

1.1e-55

65.91

Show/hide

Query:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA
        RNRLAKGLQ+ HNH+GNLQLVAQYLT+LG+LAL+LHDTVQAREILRSSLTLAKKLYDIPTQ+WVLS+ T LYQ+LGEKGNEMEN E++ KK D+LQ RLA
Subjt:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA

Query:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAI--GGPSLGVNLDIPESVGVSVSLPT-SSLKLVDVDTGRR-GKRKL
        +A  SIHHIEL+ K R+E+ Q+     ++++     S+  NLDIPESVG+    P  SS +LV +DTG+R GKR++
Subjt:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAI--GGPSLGVNLDIPESVGVSVSLPT-SSLKLVDVDTGRR-GKRKL

Arabidopsis top hits

e value

%identity

Alignment

AT5G51340.1 Tetratricopeptide repeat (TPR)-like superfamily protein

8.2e-57

65.91

Show/hide

Query:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA
        RNRLAKGLQ+ HNH+GNLQLVAQYLT+LG+LAL+LHDTVQAREILRSSLTLAKKLYDIPTQ+WVLS+ T LYQ+LGEKGNEMEN E++ KK D+LQ RLA
Subjt:  RNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRLA

Query:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAI--GGPSLGVNLDIPESVGVSVSLPT-SSLKLVDVDTGRR-GKRKL
        +A  SIHHIEL+ K R+E+ Q+     ++++     S+  NLDIPESVG+    P  SS +LV +DTG+R GKR++
Subjt:  DAHSSIHHIELIDKVRLEIQQLKEVDIKRAI--GGPSLGVNLDIPESVGVSVSLPT-SSLKLVDVDTGRR-GKRKL

Sequences

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CDS sequence

Show/hide CDS sequence

CAACGGTGTTTTTTTTTTCCGCTCCTGTTCCACAGAAATCGATTGGCGAAAGGATTGCAATTGACCCATAATCATTTGGGGAATCTTCAACTTGTTGCACAATATTTGAC
AATCCTTGGGAGTTTGGCACTTGCTCTACATGACACTGTGCAGGCCAGAGAGATATTGAGATCATCTTTAACATTGGCAAAGAAACTCTATGACATCCCTACTCAGATAT
GGGTACTTTCAGTTTTAACAACTTTATACCAAGAATTGGGTGAAAAGGGAAATGAGATGGAGAATGCGGAATATCAAAGTAAAAAGGCAGATGATCTGCAAAAGAGACTG
GCCGATGCGCATTCATCCATTCATCACATCGAATTAATTGACAAAGTACGGCTTGAAATTCAGCAACTCAAGGAGGTTGACATCAAGCGTGCAATAGGTGGCCCCTCCCT
GGGAGTTAATCTTGATATACCAGAATCCGTTGGTGTGTCTGTTTCATTGCCGACTTCATCACTGAAGCTTGTGGATGTGGATACAGGAAGACGTGGAAAGAGGAAACTT

mRNA sequence

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Protein sequence

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QRCFFFPLLFHRNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENAEYQSKKADDLQKRL
ADAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLGVNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL

MS007551 (gene) of Bitter gourd (TR) v1 genome