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MS007553 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007553
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationscaffold401:114808..115017
RNA-Seq ExpressionMS007553
SyntenyMS007553
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647279.1 hypothetical protein Csa_002929 [Cucumis sativus]1.3e-0956.45Show/hide
Query:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALD
        M I+SWN  GL S  KRAL+K L+ + NP+IV+L+ETKL+  D  IIKY+WS   I WT LD
Subjt:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALD

RVW17672.1 hypothetical protein CK203_071801 [Vitis vinifera]1.7e-0947.06Show/hide
Query:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALDSTRASG
        M I+SWNVRGLGS +KR ++K  +   NP +V++QETK E  DR  +  +W++R+  W AL ++ ASG
Subjt:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALDSTRASG

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]2.1e-1058.82Show/hide
Query:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALDSTRASG
        M IL+WNVRGLGS  KRA IK  IT   P IVIL ETK   I+   IK LWSS  I W +LD++ ASG
Subjt:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALDSTRASG

XP_022154822.1 uncharacterized protein LOC111021983 [Momordica charantia]1.3e-1258.73Show/hide
Query:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALDS
        M ILSWNVRG+  + KR  +K  I K NP +V+LQETKL++IDR+IIK LWSS+D+ W  L+S
Subjt:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALDS

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]3.8e-1260.87Show/hide
Query:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALD-STRASG
        M  L+WNVRGL SW K ALIK  I++ NP +VILQETKL  +D LI+K LWS+  I W+ALD S  ASG
Subjt:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALD-STRASG

TrEMBL top hitse value%identityAlignment
A0A0A0KDG4 Uncharacterized protein6.5e-1056.45Show/hide
Query:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALD
        M I+SWN  GL S  KRAL+K L+ + NP+IV+L+ETKL+  D  IIKY+WS   I WT LD
Subjt:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALD

A0A438CWA7 Transposon TX1 uncharacterized 149 kDa protein8.4e-1047.06Show/hide
Query:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALDSTRASG
        M I+SWNVRGLGS +KR ++K  +   NP +V++QETK E  DR  +  +W++R+  W AL ++ ASG
Subjt:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALDSTRASG

A0A6J1CVN2 uncharacterized protein LOC1110146571.0e-1058.82Show/hide
Query:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALDSTRASG
        M IL+WNVRGLGS  KRA IK  IT   P IVIL ETK   I+   IK LWSS  I W +LD++ ASG
Subjt:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALDSTRASG

A0A6J1DMQ9 uncharacterized protein LOC1110219836.2e-1358.73Show/hide
Query:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALDS
        M ILSWNVRG+  + KR  +K  I K NP +V+LQETKL++IDR+IIK LWSS+D+ W  L+S
Subjt:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALDS

A0A6J1E2G6 uncharacterized protein LOC1110254051.8e-1260.87Show/hide
Query:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALD-STRASG
        M  L+WNVRGL SW K ALIK  I++ NP +VILQETKL  +D LI+K LWS+  I W+ALD S  ASG
Subjt:  MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALD-STRASG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTATTCTCTCATGGAATGTCAGGGGCTTAGGCTCATGGGATAAACGGGCCCTTATCAAAAGTCTCATCACAAAACACAATCCCACCATTGTCATCCTTCAAGAAAC
GAAACTTGAGAGAATTGATCGGCTTATCATTAAATATCTATGGAGCTCCAGGGACATTTGTTGGACAGCCCTAGATTCTACAAGAGCATCGGGGGCATTC
mRNA sequenceShow/hide mRNA sequence
ATGATTATTCTCTCATGGAATGTCAGGGGCTTAGGCTCATGGGATAAACGGGCCCTTATCAAAAGTCTCATCACAAAACACAATCCCACCATTGTCATCCTTCAAGAAAC
GAAACTTGAGAGAATTGATCGGCTTATCATTAAATATCTATGGAGCTCCAGGGACATTTGTTGGACAGCCCTAGATTCTACAAGAGCATCGGGGGCATTC
Protein sequenceShow/hide protein sequence
MIILSWNVRGLGSWDKRALIKSLITKHNPTIVILQETKLERIDRLIIKYLWSSRDICWTALDSTRASGAF