; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS007572 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007572
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionStructure-specific endonuclease subunit SLX1 homolog
Genome locationscaffold401:309389..311270
RNA-Seq ExpressionMS007572
SyntenyMS007572
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0051569 - regulation of histone H3-K4 methylation (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016593 - Cdc73/Paf1 complex (cellular component)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR000305 - GIY-YIG endonuclease
IPR027520 - Structure-specific endonuclease subunit Slx1
IPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060004.1 Structure-specific endonuclease subunit SLX1 [Cucumis melo var. makuwa]5.0e-15675.26Show/hide
Query:  EEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAA
        E+++E+EERGN  NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEI CGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAA
Subjt:  EEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAA

Query:  ATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDLEYNREYEEVCSFRVYGSTKE
        ATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK+M NAAGCPSLPEHMKVQVSPID+LPCYSEGDQGV ENEDD EY+RE EE+CSF+VYGS KE
Subjt:  ATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDLEYNREYEEVCSFRVYGSTKE

Query:  VPNEIPQKLTD--------------GCDKELEDSEREPPSSCTPSY--VGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSETEIIIEDGEEDQFEGNG
        V NE+PQKL D              GCDKELE +E+ PPSSCTPSY  VGMS+D+   ++ LE+ +R   SC  S TVAG S TEIII+DGEE+QFEG+G
Subjt:  VPNEIPQKLTD--------------GCDKELEDSEREPPSSCTPSY--VGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSETEIIIEDGEEDQFEGNG

Query:  VNLQQKPGSTN-------SMSKVGRCNIGYPPS-EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFIRL
        +NLQ++PG  N        +SKV RC+ G  P+ EYEVIDV TPSPDCRTSS+ RFKRR+TS   SE+IDLTKSPTFI+L
Subjt:  VNLQQKPGSTN-------SMSKVGRCNIGYPPS-EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFIRL

XP_004153269.1 structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus]2.3e-15372.54Show/hide
Query:  MRKRKEKQEISKPMVVAEEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQF
        MRKRKEK EI K     +E++E+EERGNE NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEI CGAWRTKRKRPWEMVLCIYGFPTNVSALQF
Subjt:  MRKRKEKQEISKPMVVAEEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQF

Query:  EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDLEYN
        EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAW  LNITVNYFSTK+M NAAGCPSLPEHMKVQVSPI++LPCYSEGDQ + ENE D EYN
Subjt:  EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDLEYN

Query:  REYEEVCSFRVYGSTKEVPNEIPQKLTD--------------GCDKELEDSEREPPSSCTPSY--VGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSE
        RE EE+C FRVYGS KEV NE+PQKL D              GCDKELE +E+ PPSSCTPSY  VGMS+D+   ++ LE+ +R   SC  S  VAG S 
Subjt:  REYEEVCSFRVYGSTKEVPNEIPQKLTD--------------GCDKELEDSEREPPSSCTPSY--VGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSE

Query:  TEIIIEDGEEDQFEGNGVNLQQKPGSTN-------SMSKVGRCNIGYPPS-EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFIRL
        TEI+I+D EE+Q EG+ +NLQ++PG  N        +SKV R N G+ P+ EYEVIDV TPSPDCRTSS+ RFKRR+TS   SE+IDLTKSPTFI+L
Subjt:  TEIIIEDGEEDQFEGNGVNLQQKPGSTN-------SMSKVGRCNIGYPPS-EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFIRL

XP_008457313.1 PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo]3.7e-15974.69Show/hide
Query:  MRKRKEKQEISKPM--VVAEEENED----EERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTN
        MRKRKEK EI K M  VV +EE ED    EERGN  NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEI CGAWRTKRKRPWEMVLCIYGFPTN
Subjt:  MRKRKEKQEISKPM--VVAEEENED----EERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTN

Query:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENE
        VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK+M NAAGCPSLPEHMKVQVSPID+LPCYSEGDQGV ENE
Subjt:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENE

Query:  DDLEYNREYEEVCSFRVYGSTKEVPNEIPQKLTD--------------GCDKELEDSEREPPSSCTPSY--VGMSHDMHGHNKELEDYKRVPPSCAPSYT
        DD EY+RE EE+CSF+VYGS KEV NE+PQKL D              GCDKELE +E+ PPSSCTPSY  VGMS+D+   ++ LE+ +R   SC  S T
Subjt:  DDLEYNREYEEVCSFRVYGSTKEVPNEIPQKLTD--------------GCDKELEDSEREPPSSCTPSY--VGMSHDMHGHNKELEDYKRVPPSCAPSYT

Query:  VAGRSETEIIIEDGEEDQFEGNGVNLQQKPGSTN-------SMSKVGRCNIGYPPS-EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTF
        VAG S TEIII+DGEE+QFEG+G+NLQ++PG  N        +SKV RC+ G  P+ EYEVIDV TPSPDCRTSS+ RFKRR+TS   SE+IDLTKSPTF
Subjt:  VAGRSETEIIIEDGEEDQFEGNGVNLQQKPGSTN-------SMSKVGRCNIGYPPS-EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTF

Query:  IRL
        I+L
Subjt:  IRL

XP_022154854.1 structure-specific endonuclease subunit SLX1 [Momordica charantia]2.1e-21899.46Show/hide
Query:  MRKRKEKQEISKPMVVAEEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQF
        MRKRKEKQEISKPMVVAEEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQF
Subjt:  MRKRKEKQEISKPMVVAEEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQF

Query:  EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDLEYN
        EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDLEYN
Subjt:  EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDLEYN

Query:  REYEEVCSFRVYGSTKEVPNEIPQKLTDGCDKELEDSEREPPSSCTPSYVGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSETEIIIEDGEEDQFEGN
        REYEEVCSFRVYGSTKEVPNEIPQKLTDGCDKELEDSEREPPSSC+PSYVGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSETEIIIEDGEEDQFEGN
Subjt:  REYEEVCSFRVYGSTKEVPNEIPQKLTDGCDKELEDSEREPPSSCTPSYVGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSETEIIIEDGEEDQFEGN

Query:  GVNLQQKPGSTNSMSKVGRCNIGYPPSEYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFIRL
        GVNLQQKPGSTNSMSKVGRCNIGYPPSEYEVIDVCTPSPDCRTSSNSRFKRRITS VGSEIIDLTKSPTFIRL
Subjt:  GVNLQQKPGSTNSMSKVGRCNIGYPPSEYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFIRL

XP_038894793.1 structure-specific endonuclease subunit SLX1 [Benincasa hispida]2.8e-16274.81Show/hide
Query:  MRKRKEKQEISKPMVVAEEENED------EERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTN
        MRKRKE+ EISK M VAEEE ED      EE  NE NGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEI CGAWRTKRKRPWEMVLCIYGFPTN
Subjt:  MRKRKEKQEISKPMVVAEEENED------EERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTN

Query:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENE
        VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYM NAAGCPSLP+HMKVQVSPI++LPCYSEGDQ V ENE
Subjt:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENE

Query:  DDLEYNREYEEVCSFRVYGSTKEVPNEIPQKLTD-------------GCDKELEDSEREPPSSCTPSYV--GMSHDMHGHNKELEDYKRVPPSCAPSYTV
        DD EYNRE EE+CSFRVYGS KEV NE+PQKL D             GCDKE E++E+ PPSSC PSY+  GMS+D+HG ++ELE+ +R P SCAPS  V
Subjt:  DDLEYNREYEEVCSFRVYGSTKEVPNEIPQKLTD-------------GCDKELEDSEREPPSSCTPSYV--GMSHDMHGHNKELEDYKRVPPSCAPSYTV

Query:  AGRSETEIIIEDGEEDQFEGNGVNLQQK-------PGSTNSMSKVGRCNIGYPPSEYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFIR
           S TEIII+DG+EDQ EG G+NL+Q+        G  + +SKV RCNI  PP EYEVIDV TPSPDCRT+S+ R KR++TS   SEIIDLTKSPTFI+
Subjt:  AGRSETEIIIEDGEEDQFEGNGVNLQQK-------PGSTNSMSKVGRCNIGYPPSEYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFIR

Query:  L
        L
Subjt:  L

TrEMBL top hitse value%identityAlignment
A0A0A0M0Y6 Structure-specific endonuclease subunit SLX1 homolog1.1e-15372.54Show/hide
Query:  MRKRKEKQEISKPMVVAEEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQF
        MRKRKEK EI K     +E++E+EERGNE NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEI CGAWRTKRKRPWEMVLCIYGFPTNVSALQF
Subjt:  MRKRKEKQEISKPMVVAEEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQF

Query:  EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDLEYN
        EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAW  LNITVNYFSTK+M NAAGCPSLPEHMKVQVSPI++LPCYSEGDQ + ENE D EYN
Subjt:  EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDLEYN

Query:  REYEEVCSFRVYGSTKEVPNEIPQKLTD--------------GCDKELEDSEREPPSSCTPSY--VGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSE
        RE EE+C FRVYGS KEV NE+PQKL D              GCDKELE +E+ PPSSCTPSY  VGMS+D+   ++ LE+ +R   SC  S  VAG S 
Subjt:  REYEEVCSFRVYGSTKEVPNEIPQKLTD--------------GCDKELEDSEREPPSSCTPSY--VGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSE

Query:  TEIIIEDGEEDQFEGNGVNLQQKPGSTN-------SMSKVGRCNIGYPPS-EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFIRL
        TEI+I+D EE+Q EG+ +NLQ++PG  N        +SKV R N G+ P+ EYEVIDV TPSPDCRTSS+ RFKRR+TS   SE+IDLTKSPTFI+L
Subjt:  TEIIIEDGEEDQFEGNGVNLQQKPGSTN-------SMSKVGRCNIGYPPS-EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFIRL

A0A1S3C574 Structure-specific endonuclease subunit SLX1 homolog1.8e-15974.69Show/hide
Query:  MRKRKEKQEISKPM--VVAEEENED----EERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTN
        MRKRKEK EI K M  VV +EE ED    EERGN  NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEI CGAWRTKRKRPWEMVLCIYGFPTN
Subjt:  MRKRKEKQEISKPM--VVAEEENED----EERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTN

Query:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENE
        VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK+M NAAGCPSLPEHMKVQVSPID+LPCYSEGDQGV ENE
Subjt:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENE

Query:  DDLEYNREYEEVCSFRVYGSTKEVPNEIPQKLTD--------------GCDKELEDSEREPPSSCTPSY--VGMSHDMHGHNKELEDYKRVPPSCAPSYT
        DD EY+RE EE+CSF+VYGS KEV NE+PQKL D              GCDKELE +E+ PPSSCTPSY  VGMS+D+   ++ LE+ +R   SC  S T
Subjt:  DDLEYNREYEEVCSFRVYGSTKEVPNEIPQKLTD--------------GCDKELEDSEREPPSSCTPSY--VGMSHDMHGHNKELEDYKRVPPSCAPSYT

Query:  VAGRSETEIIIEDGEEDQFEGNGVNLQQKPGSTN-------SMSKVGRCNIGYPPS-EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTF
        VAG S TEIII+DGEE+QFEG+G+NLQ++PG  N        +SKV RC+ G  P+ EYEVIDV TPSPDCRTSS+ RFKRR+TS   SE+IDLTKSPTF
Subjt:  VAGRSETEIIIEDGEEDQFEGNGVNLQQKPGSTN-------SMSKVGRCNIGYPPS-EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTF

Query:  IRL
        I+L
Subjt:  IRL

A0A5D3BBR0 Structure-specific endonuclease subunit SLX1 homolog2.4e-15675.26Show/hide
Query:  EEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAA
        E+++E+EERGN  NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEI CGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAA
Subjt:  EEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAA

Query:  ATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDLEYNREYEEVCSFRVYGSTKE
        ATFKSLSGVANKVKLAYTMLTLPAWC LNITVNYFSTK+M NAAGCPSLPEHMKVQVSPID+LPCYSEGDQGV ENEDD EY+RE EE+CSF+VYGS KE
Subjt:  ATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDLEYNREYEEVCSFRVYGSTKE

Query:  VPNEIPQKLTD--------------GCDKELEDSEREPPSSCTPSY--VGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSETEIIIEDGEEDQFEGNG
        V NE+PQKL D              GCDKELE +E+ PPSSCTPSY  VGMS+D+   ++ LE+ +R   SC  S TVAG S TEIII+DGEE+QFEG+G
Subjt:  VPNEIPQKLTD--------------GCDKELEDSEREPPSSCTPSY--VGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSETEIIIEDGEEDQFEGNG

Query:  VNLQQKPGSTN-------SMSKVGRCNIGYPPS-EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFIRL
        +NLQ++PG  N        +SKV RC+ G  P+ EYEVIDV TPSPDCRTSS+ RFKRR+TS   SE+IDLTKSPTFI+L
Subjt:  VNLQQKPGSTN-------SMSKVGRCNIGYPPS-EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFIRL

A0A6J1DNH4 Structure-specific endonuclease subunit SLX1 homolog1.0e-21899.46Show/hide
Query:  MRKRKEKQEISKPMVVAEEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQF
        MRKRKEKQEISKPMVVAEEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQF
Subjt:  MRKRKEKQEISKPMVVAEEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQF

Query:  EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDLEYN
        EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDLEYN
Subjt:  EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDLEYN

Query:  REYEEVCSFRVYGSTKEVPNEIPQKLTDGCDKELEDSEREPPSSCTPSYVGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSETEIIIEDGEEDQFEGN
        REYEEVCSFRVYGSTKEVPNEIPQKLTDGCDKELEDSEREPPSSC+PSYVGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSETEIIIEDGEEDQFEGN
Subjt:  REYEEVCSFRVYGSTKEVPNEIPQKLTDGCDKELEDSEREPPSSCTPSYVGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSETEIIIEDGEEDQFEGN

Query:  GVNLQQKPGSTNSMSKVGRCNIGYPPSEYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFIRL
        GVNLQQKPGSTNSMSKVGRCNIGYPPSEYEVIDVCTPSPDCRTSSNSRFKRRITS VGSEIIDLTKSPTFIRL
Subjt:  GVNLQQKPGSTNSMSKVGRCNIGYPPSEYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFIRL

A0A6J1HZQ2 Structure-specific endonuclease subunit SLX1 homolog1.8e-14370.45Show/hide
Query:  MRKRKEKQEISKPMVVAE---EENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSA
        MR+RKEK EI K M VAE   E++EDEERGNE NGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEI CGAWRTKRKRPWEMV CIYGFPTNVSA
Subjt:  MRKRKEKQEISKPMVVAE---EENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSA

Query:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDL
        LQFEWAWQHPNESLAVRSAAATFKSLSG+ANK+KLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLP HM+VQ+SPID+LPCYSEGD+ V ENE+D 
Subjt:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDL

Query:  EYNREYEEVCSFRVYGSTKEVPNEIPQKLTD-------------GCDKELEDSEREPPSSCTPSY--VGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGR
        EYN+EYEEVCS +V+G   EVPNEIPQ L D             G D+EL+D+E+ P SSCTPSY  VG+S+D+ G +++       P  CA   TV G 
Subjt:  EYNREYEEVCSFRVYGSTKEVPNEIPQKLTD-------------GCDKELEDSEREPPSSCTPSY--VGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGR

Query:  SETEIIIEDGEEDQFEGNGVNLQQKPGSTNSMS----KVGRCNIGYPPSEYEVIDVCTPSPDCRTSSNSRFKRRITSVV
          TEIII+DGEE+Q EG+G+ LQQ+PG   ++S    ++ + + G PP EYEVIDV TPSP CRTSS+ +FKRR+ +VV
Subjt:  SETEIIIEDGEEDQFEGNGVNLQQKPGSTNSMS----KVGRCNIGYPPSEYEVIDVCTPSPDCRTSSNSRFKRRITSVV

SwissProt top hitse value%identityAlignment
Q0IH86 Structure-specific endonuclease subunit slx18.7e-2638.96Show/hide
Query:  ESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVA
        E  GF+  YLL    P+YKG  YIGFTVNP+RRI+QHN G+   GAW+T  + PW+MVL ++GFP +++AL+FEWAWQHP+ S  +       K  S   
Subjt:  ESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVA

Query:  NKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLP
          + +   ML +  W  L +T+ +   +Y          P HM +    +   P
Subjt:  NKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLP

Q32PI0 Structure-specific endonuclease subunit SLX11.6e-2741.38Show/hide
Query:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK
        FF  YLL    PR++G  Y+GFTVNP RR++QHN G    GAWRT  + PWEMVL ++GFP+ V+AL+FEWAWQHP  S  +       +  +  A  ++
Subjt:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK

Query:  LAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSP
        +   ML  P W  L +T+ +    +  +   CP  P HM +   P
Subjt:  LAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSP

Q5PQP5 Structure-specific endonuclease subunit SLX18.4e-2940.12Show/hide
Query:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK
        FF  YLL    PR++G  Y+GFTVNP RR+RQHN G    GAWRT  + PW+MVL ++GFP+ V+AL+FEWAWQHP  S  +       +S +     ++
Subjt:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK

Query:  LAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSP------IDDLPCYSEGD
        +   ML +P W  L +TV +    + +    CP+ P HM +   P      +   P  SE D
Subjt:  LAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSP------IDDLPCYSEGD

Q8BX32 Structure-specific endonuclease subunit SLX12.9e-2940.74Show/hide
Query:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK
        FF  YLL    PR++G  Y+GFTVNP RR+RQHN G    GAWRT  + PW+MVL I+GFP+ V+AL+FEWAWQHP  S  +       +S +  A  ++
Subjt:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK

Query:  LAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSP------IDDLPCYSEGD
        +   ML +P W  L +T+ +    + +    CP+ P HM +   P      +   P  SE D
Subjt:  LAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSP------IDDLPCYSEGD

Q9BQ83 Structure-specific endonuclease subunit SLX11.1e-2540Show/hide
Query:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK
        FF  YLL    PRY+G  Y+GFTVN  RR++QHN G    GAWRT  + PWEMVL ++GFP++V+AL+FEWAWQHP+ S  +       +  +  A  ++
Subjt:  FFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHN-GEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK

Query:  LAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSP
        +   ML  P W  L +T+ +       +   C   P H+ +   P
Subjt:  LAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSP

Arabidopsis top hitse value%identityAlignment
AT2G30350.1 Excinuclease ABC, C subunit, N-terminal3.1e-3436.95Show/hide
Query:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSE-GDQGVAENEDD
        LQFEWAWQHP ES+AVR AAA FKS SGVA+K+KL YTML LPAW SLN+TVNYFS+KY ++    PSLP HMKVQV  ++DL  +++  D    E+E+ 
Subjt:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSE-GDQGVAENEDD

Query:  LEYNREYEEVCSFRVYGSTKEVPNEIPQ---KLTDGCDKELEDSEREPPSSCTPSYVGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSETEIIIEDG-
         E N E ++           +  + + Q     T   D    +  +EP +         +    G   E E  +            A   E E +  D  
Subjt:  LEYNREYEEVCSFRVYGSTKEVPNEIPQ---KLTDGCDKELEDSEREPPSSCTPSYVGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSETEIIIEDG-

Query:  -----------EEDQFEGNGVNLQQKPGSTNSMSKVGRCNIGYPPS-----EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFI
                    ED+     +      GST +M K  R    +  S     + EVID+ TPSP CR  S+ + +RR+     SE IDLT SP FI
Subjt:  -----------EEDQFEGNGVNLQQKPGSTNSMSKVGRCNIGYPPS-----EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFI

AT2G30350.2 Excinuclease ABC, C subunit, N-terminal4.8e-7243.62Show/hide
Query:  MRKRKEKQEISKPMVVAEEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQF
        MR+++  ++   P+       ED   G +  GFF+CYLL S  PR+KG TYIGFTVNP+RRIRQHNGEI  GAWRTK+KRPWEMVLCIYGFPTNVSALQF
Subjt:  MRKRKEKQEISKPMVVAEEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQF

Query:  EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSE-GDQGVAENEDDLEY
        EWAWQHP ES+AVR AAA FKS SGVA+K+KL YTML LPAW SLN+TVNYFS+KY ++    PSLP HMKVQV  ++DL  +++  D    E+E+  E 
Subjt:  EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSE-GDQGVAENEDDLEY

Query:  NREYEEVCSFRVYGSTKEVPNEIPQ---KLTDGCDKELEDSEREPPSSCTPSYVGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSETEIIIEDG----
        N E ++           +  + + Q     T   D    +  +EP +         +    G   E E  +            A   E E +  D     
Subjt:  NREYEEVCSFRVYGSTKEVPNEIPQ---KLTDGCDKELEDSEREPPSSCTPSYVGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSETEIIIEDG----

Query:  --------EEDQFEGNGVNLQQKPGSTNSMSKVGRCNIGYPPS-----EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFI
                 ED+     +      GST +M K  R    +  S     + EVID+ TPSP CR  S+ + +RR+     SE IDLT SP FI
Subjt:  --------EEDQFEGNGVNLQQKPGSTNSMSKVGRCNIGYPPS-----EYEVIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFI

AT5G43210.1 Excinuclease ABC, C subunit, N-terminal3.2e-0740.28Show/hide
Query:  FSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQ
        +S YL+ S     K  TY+G T +  RR++QHNGEI  GA  +   RPW     I GF     A  FE  W+
Subjt:  FSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAAGAGGAAAGAGAAGCAAGAAATCTCTAAACCCATGGTTGTTGCAGAGGAGGAAAATGAAGACGAAGAGAGGGGCAATGAATCGAACGGCTTCTTCTCATGCTA
TCTCTTGGCTTCTGCTTGCCCTCGTTACAAAGGCCATACCTATATCGGATTCACAGTGAACCCAAAACGTAGAATCAGGCAGCACAATGGTGAAATTGGATGCGGTGCGT
GGCGTACTAAAAGGAAGAGACCTTGGGAGATGGTCTTGTGCATTTATGGCTTCCCCACTAATGTCTCTGCTCTCCAGTTTGAATGGGCGTGGCAGCACCCTAATGAGTCA
TTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCCAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCAGCTTGGTGCAGTTTGAATAT
CACTGTAAACTACTTCTCAACAAAGTACATGAATAATGCCGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCGATGACCTTCCATGTTATT
CTGAAGGAGACCAAGGTGTAGCTGAAAATGAAGATGACTTGGAGTACAACAGAGAGTACGAAGAAGTTTGCAGTTTTCGAGTATATGGATCGACAAAAGAAGTTCCAAAT
GAAATTCCTCAAAAGTTAACGGATGGATGCGATAAAGAACTTGAGGACAGTGAACGAGAGCCACCTTCTTCGTGTACTCCGTCCTATGTGGGTATGTCCCATGACATGCA
TGGACACAATAAAGAACTTGAGGATTATAAACGAGTGCCACCTTCGTGTGCTCCGTCTTATACTGTTGCGGGTAGGTCCGAGACTGAAATCATCATTGAAGATGGAGAGG
AAGACCAATTTGAAGGGAATGGTGTGAACTTGCAGCAGAAACCTGGTAGTACGAATTCAATGAGCAAAGTTGGGAGGTGTAATATTGGGTATCCCCCTAGTGAGTATGAG
GTTATAGATGTGTGTACCCCATCTCCCGACTGCAGAACAAGTTCCAACAGTCGATTCAAGAGAAGAATTACTTCTGTTGTTGGGTCTGAGATTATTGACTTGACCAAATC
TCCTACGTTTATCCGATTG
mRNA sequenceShow/hide mRNA sequence
ATGAGGAAGAGGAAAGAGAAGCAAGAAATCTCTAAACCCATGGTTGTTGCAGAGGAGGAAAATGAAGACGAAGAGAGGGGCAATGAATCGAACGGCTTCTTCTCATGCTA
TCTCTTGGCTTCTGCTTGCCCTCGTTACAAAGGCCATACCTATATCGGATTCACAGTGAACCCAAAACGTAGAATCAGGCAGCACAATGGTGAAATTGGATGCGGTGCGT
GGCGTACTAAAAGGAAGAGACCTTGGGAGATGGTCTTGTGCATTTATGGCTTCCCCACTAATGTCTCTGCTCTCCAGTTTGAATGGGCGTGGCAGCACCCTAATGAGTCA
TTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCCAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCAGCTTGGTGCAGTTTGAATAT
CACTGTAAACTACTTCTCAACAAAGTACATGAATAATGCCGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCGATGACCTTCCATGTTATT
CTGAAGGAGACCAAGGTGTAGCTGAAAATGAAGATGACTTGGAGTACAACAGAGAGTACGAAGAAGTTTGCAGTTTTCGAGTATATGGATCGACAAAAGAAGTTCCAAAT
GAAATTCCTCAAAAGTTAACGGATGGATGCGATAAAGAACTTGAGGACAGTGAACGAGAGCCACCTTCTTCGTGTACTCCGTCCTATGTGGGTATGTCCCATGACATGCA
TGGACACAATAAAGAACTTGAGGATTATAAACGAGTGCCACCTTCGTGTGCTCCGTCTTATACTGTTGCGGGTAGGTCCGAGACTGAAATCATCATTGAAGATGGAGAGG
AAGACCAATTTGAAGGGAATGGTGTGAACTTGCAGCAGAAACCTGGTAGTACGAATTCAATGAGCAAAGTTGGGAGGTGTAATATTGGGTATCCCCCTAGTGAGTATGAG
GTTATAGATGTGTGTACCCCATCTCCCGACTGCAGAACAAGTTCCAACAGTCGATTCAAGAGAAGAATTACTTCTGTTGTTGGGTCTGAGATTATTGACTTGACCAAATC
TCCTACGTTTATCCGATTG
Protein sequenceShow/hide protein sequence
MRKRKEKQEISKPMVVAEEENEDEERGNESNGFFSCYLLASACPRYKGHTYIGFTVNPKRRIRQHNGEIGCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNES
LAVRSAAATFKSLSGVANKVKLAYTMLTLPAWCSLNITVNYFSTKYMNNAAGCPSLPEHMKVQVSPIDDLPCYSEGDQGVAENEDDLEYNREYEEVCSFRVYGSTKEVPN
EIPQKLTDGCDKELEDSEREPPSSCTPSYVGMSHDMHGHNKELEDYKRVPPSCAPSYTVAGRSETEIIIEDGEEDQFEGNGVNLQQKPGSTNSMSKVGRCNIGYPPSEYE
VIDVCTPSPDCRTSSNSRFKRRITSVVGSEIIDLTKSPTFIRL