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MS007578 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007578
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTrafficking protein particle complex subunit
Genome locationscaffold401:381074..381590
RNA-Seq ExpressionMS007578
SyntenyMS007578
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:1990070 - TRAPPI protein complex (cellular component)
GO:1990071 - TRAPPII protein complex (cellular component)
GO:1990072 - TRAPPIII protein complex (cellular component)
InterPro domainsIPR007194 - Transport protein particle (TRAPP) component
IPR016696 - TRAPP I complex, subunit 5
IPR024096 - NO signalling/Golgi transport ligand-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RXI05588.1 hypothetical protein DVH24_017630 [Malus domestica]9.3e-3993.62Show/hide
Query:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVTILFCVML
        +VADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG FNCGAFVAGIVRGVLD AGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVTI FC  L
Subjt:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVTILFCVML

RZC53937.1 hypothetical protein C5167_012786 [Papaver somniferum]7.1e-3995.45Show/hide
Query:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVTI
        +VADSLEKGTEHEDEYMISEKELLVNRFIS+PKDMG FNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPRTTILIKFAEEVTI
Subjt:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVTI

TQD82889.1 hypothetical protein C1H46_031553 [Malus baccata]1.6e-3896.55Show/hide
Query:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVT
        +VADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG FNCGAFVAGIVRGVLD AGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVT
Subjt:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVT

VAH45403.1 unnamed protein product [Triticum turgidum subsp. durum]1.2e-3896.51Show/hide
Query:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV
        QVADSLEKGTEHEDEYMISEKELLVNRFIS+PKDMGAFNCGAFVAGIVRGVLD+AGFPAVVTAHFVP+EGQQRPRTTILIKFAEEV
Subjt:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV

XP_022154882.1 trafficking protein particle complex subunit 5 [Momordica charantia]9.3e-3998.84Show/hide
Query:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV
        +VADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV
Subjt:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV

TrEMBL top hitse value%identityAlignment
A0A446M6D1 Uncharacterized protein5.9e-3996.51Show/hide
Query:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV
        QVADSLEKGTEHEDEYMISEKELLVNRFIS+PKDMGAFNCGAFVAGIVRGVLD+AGFPAVVTAHFVP+EGQQRPRTTILIKFAEEV
Subjt:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV

A0A453BEF0 Uncharacterized protein5.9e-3996.51Show/hide
Query:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV
        QVADSLEKGTEHEDEYMISEKELLVNRFIS+PKDMGAFNCGAFVAGIVRGVLD+AGFPAVVTAHFVP+EGQQRPRTTILIKFAEEV
Subjt:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV

A0A498KDG2 Trafficking protein particle complex subunit4.5e-3993.62Show/hide
Query:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVTILFCVML
        +VADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG FNCGAFVAGIVRGVLD AGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVTI FC  L
Subjt:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVTILFCVML

A0A4Y7IZA6 Uncharacterized protein3.4e-3995.45Show/hide
Query:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVTI
        +VADSLEKGTEHEDEYMISEKELLVNRFIS+PKDMG FNCGAFVAGIVRGVLDSAGFPAVVTAHFVP+EGQQRPRTTILIKFAEEVTI
Subjt:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVTI

A0A6J1DMW5 Trafficking protein particle complex subunit4.5e-3998.84Show/hide
Query:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV
        +VADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV
Subjt:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV

SwissProt top hitse value%identityAlignment
P15847 Trafficking protein particle complex subunit 51.4e-1350Show/hide
Query:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV
        Q +  L K  +   EYMI +K +L+N+FI++PKD G  NC AF AGIV G L S+ F A VTAH +  EG     TTI IKF  EV
Subjt:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV

Q54YG5 Trafficking protein particle complex subunit 57.4e-2363.1Show/hide
Query:  ADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV
        ADSLEK TE +DEYMIS+  ++VN+FIS+PK + + NC AFVAGI+ G+L SA FPA VTAH V VEG++ P+T ILIKF  EV
Subjt:  ADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV

Q5F359 Trafficking protein particle complex subunit 59.1e-1345.24Show/hide
Query:  ADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV
        AD LE+  + +  Y + E+E LVN FIS+P++    NC AF AG+V  VL ++GFPA VTAH+          TT++IKF E V
Subjt:  ADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV

Q7KQM2 Trafficking protein particle complex subunit 51.4e-1350Show/hide
Query:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV
        Q +  L K  +   EYMI +K +L+N+FI++PKD G  NC AF AGIV G L S+ F A VTAH +  EG     TTI IKF  EV
Subjt:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV

Q9P7N9 Transport protein particle subunit trs318.8e-1653.57Show/hide
Query:  ADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV
        ADSLEK  E  DEYMI +   L+N+FIS+PK+M   NC A++AGI+ G LDSA FP   +AH VP+  Q   RT ILIK    V
Subjt:  ADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV

Arabidopsis top hitse value%identityAlignment
AT5G58030.1 Transport protein particle (TRAPP) component3.6e-4193.02Show/hide
Query:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV
        +VADSLEKGTEHEDEYMISEKELLVNRFISIPKDMG FNCGAFVAGIV+GVLD+AGFPAVVTAHFVP+EGQQRPRTTILIKFA+EV
Subjt:  QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGGTTGCTGACTCACTTGAGAAAGGCACTGAGCATGAAGATGAGTACATGATCAGTGAAAAAGAGCTTCTCGTCAATAGATTTATTTCAATTCCGAAAGACATGGGAGC
ATTTAACTGCGGAGCTTTTGTTGCTGGCATAGTAAGAGGTGTTTTAGACAGTGCTGGGTTTCCAGCTGTTGTAACGGCACATTTTGTTCCAGTGGAGGGGCAACAACGAC
CACGGACGACTATCTTGATTAAATTTGCAGAAGAGGTGACTATTCTTTTCTGTGTAATGCTTCTTGGAGTTTTTATTTTTTATTTTTATTTATTTTTT
mRNA sequenceShow/hide mRNA sequence
CAGGTTGCTGACTCACTTGAGAAAGGCACTGAGCATGAAGATGAGTACATGATCAGTGAAAAAGAGCTTCTCGTCAATAGATTTATTTCAATTCCGAAAGACATGGGAGC
ATTTAACTGCGGAGCTTTTGTTGCTGGCATAGTAAGAGGTGTTTTAGACAGTGCTGGGTTTCCAGCTGTTGTAACGGCACATTTTGTTCCAGTGGAGGGGCAACAACGAC
CACGGACGACTATCTTGATTAAATTTGCAGAAGAGGTGACTATTCTTTTCTGTGTAATGCTTCTTGGAGTTTTTATTTTTTATTTTTATTTATTTTTT
Protein sequenceShow/hide protein sequence
QVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGAFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVTILFCVMLLGVFIFYFYLFF