CuGenDBv2

Gene ID	MS007582
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	scaffold836:52038..52169
RNA-Seq Expression	MS007582
Synteny	MS007582
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036942.1 uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]

5.8e-11

77.27

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Query:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK
        EVQPPLTDKEMT+MFMNTLR+PF++ M+GN +TNF DIIVIGE+
Subjt:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK

KAA0036950.1 uncharacterized protein E6C27_scaffold86G00300 [Cucumis melo var. makuwa]

5.8e-11

77.27

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Query:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK
        EVQPPLTDKEMT+MFMNTLR+PF++ M+GN +TNF DIIVIGE+
Subjt:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK

KAA0036957.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]

5.8e-11

77.27

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Query:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK
        EVQPPLTDKEMT+MFMNTLR+PF++ M+GN +TNF DIIVIGE+
Subjt:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK

KAA0042503.1 uncharacterized protein E6C27_scaffold246G00570 [Cucumis melo var. makuwa]

2.0e-11

79.55

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Query:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK
        EVQPPLTDKEMT+MFMNTLR+PF+D M+GN +TNF DIIVIGE+
Subjt:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK

KAA0055607.1 Gag-pro-like protein [Cucumis melo var. makuwa]

6.9e-12

79.55

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Query:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK
        EVQPPLTDKEMT+MFMNTLR+PF++ M+GN +TNFFDIIVIGE+
Subjt:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein

2.8e-11

77.27

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Query:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK
        EVQPPLTDKEMT+MFMNTLR+PF++ M+GN +TNF DIIVIGE+
Subjt:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK

A0A5A7TGY2 Uncharacterized protein

9.7e-12

79.55

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Query:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK
        EVQPPLTDKEMT+MFMNTLR+PF+D M+GN +TNF DIIVIGE+
Subjt:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK

A0A5A7UM01 Gag-pro-like protein

3.3e-12

79.55

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Query:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK
        EVQPPLTDKEMT+MFMNTLR+PF++ M+GN +TNFFDIIVIGE+
Subjt:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK

A0A5A7V3W7 Retrotrans_gag domain-containing protein

2.8e-11

77.27

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Query:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK
        EVQPPLTDKEMT+MFMNTLR+PF++ M+GN +TNF DIIVIGE+
Subjt:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK

A0A5D3BVZ5 Gag-pro-like protein

2.8e-11

77.27

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Query:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK
        EVQPPLTDKEMT+MFMNTLR+PF++ M+GN +TNF DIIVIGE+
Subjt:  EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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GAGGTTCAACCACCTTTGACAGACAAAGAAATGACTAATATGTTCATGAACACCTTGCGATCTCCCTTTCATGATTGTATGGTTGGTAATACAGCAACCAATTTTTTTGA
CATTATTGTTATTGGTGAGAAG

mRNA sequence

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GAGGTTCAACCACCTTTGACAGACAAAGAAATGACTAATATGTTCATGAACACCTTGCGATCTCCCTTTCATGATTGTATGGTTGGTAATACAGCAACCAATTTTTTTGA
CATTATTGTTATTGGTGAGAAG

Protein sequence

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EVQPPLTDKEMTNMFMNTLRSPFHDCMVGNTATNFFDIIVIGEK

MS007582 (gene) of Bitter gourd (TR) v1 genome