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MS007588 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007588
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold836:146702..147076
RNA-Seq ExpressionMS007588
SyntenyMS007588
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN70431.1 hypothetical protein VITISV_030910 [Vitis vinifera]1.9e-0635.34Show/hide
Query:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIW----IKIVKIV---L
        GKVNT D LQ + P  AL P  C+LC ANGE I HLF HCP      +  F+     WV   +  D+L     G   S +   +W    + +V IV    
Subjt:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIW----IKIVKIV---L

Query:  SKSLFE--------CFNLTNFKATQWCSLSILF
        +K +FE         ++L  F +T W S S  F
Subjt:  SKSLFE--------CFNLTNFKATQWCSLSILF

RVW46830.1 putative ribonuclease H protein [Vitis vinifera]1.9e-0640Show/hide
Query:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIW
        GKVNT D LQ + P  AL P +C+LC  NGE I HLF HCP      H  F      WV   +  D+L     G   S +   +W
Subjt:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIW

RVX20160.1 Protein RETICULATA, chloroplastic [Vitis vinifera]1.4e-0640Show/hide
Query:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIW
        GKVNT D LQ + P  AL P  C+LC  NGE I HLF HCP  +   H  F      WV   +  D+L     G   S +  ++W
Subjt:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIW

XP_022153214.1 uncharacterized protein LOC111020765 [Momordica charantia]1.9e-1942.86Show/hide
Query:  YKGKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCG-PNLSSKAHLIWIKIVKIVLSKSL
        ++GK+NTAD++Q K PS ALLPS C LC+ +GE   HLFFHC +AS C +L F +FN  W F     D ++ LL G P+LSS    +W+ +VK +LS+  
Subjt:  YKGKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCG-PNLSSKAHLIWIKIVKIVLSKSL

Query:  F---------------ECFNLTNFKATQWCSLSILFGYYS
        F               E F    FKA+ WCSL   F ++S
Subjt:  F---------------ECFNLTNFKATQWCSLSILFGYYS

XP_038903695.1 uncharacterized protein LOC120090219 [Benincasa hispida]1.0e-0732.12Show/hide
Query:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIWIKIVKIVLSKSLFE-
        G++N A+VLQ K P+ +L P++C  C  + E   HLFF CPY+S C +     FN      +     +F LL  P       L+W   VK +L+   FE 
Subjt:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIWIKIVKIVLSKSLFE-

Query:  -----------C---FNLTNFKATQWCSLSILFGYYS
                   C         +A+ WC LS  F  YS
Subjt:  -----------C---FNLTNFKATQWCSLSILFGYYS

TrEMBL top hitse value%identityAlignment
A0A438EGK2 Putative ribonuclease H protein9.1e-0740Show/hide
Query:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIW
        GKVNT D LQ + P  AL P +C+LC  NGE I HLF HCP      H  F      WV   +  D+L     G   S +   +W
Subjt:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIW

A0A438KG54 Protein RETICULATA, chloroplastic7.0e-0740Show/hide
Query:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIW
        GKVNT D LQ + P  AL P  C+LC  NGE I HLF HCP  +   H  F      WV   +  D+L     G   S +  ++W
Subjt:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIW

A0A6J1DIE2 uncharacterized protein LOC1110207659.4e-2042.86Show/hide
Query:  YKGKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCG-PNLSSKAHLIWIKIVKIVLSKSL
        ++GK+NTAD++Q K PS ALLPS C LC+ +GE   HLFFHC +AS C +L F +FN  W F     D ++ LL G P+LSS    +W+ +VK +LS+  
Subjt:  YKGKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCG-PNLSSKAHLIWIKIVKIVLSKSL

Query:  F---------------ECFNLTNFKATQWCSLSILFGYYS
        F               E F    FKA+ WCSL   F ++S
Subjt:  F---------------ECFNLTNFKATQWCSLSILFGYYS

A5BNN8 Uncharacterized protein1.6e-0640Show/hide
Query:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIW
        GKVNT D LQ + P  AL P  C+LC  NGE I HLF HCP      H  F      WV   +  D+L     G   S +  ++W
Subjt:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIW

A5BQI4 Reverse transcriptase domain-containing protein9.1e-0735.34Show/hide
Query:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIW----IKIVKIV---L
        GKVNT D LQ + P  AL P  C+LC ANGE I HLF HCP      +  F+     WV   +  D+L     G   S +   +W    + +V IV    
Subjt:  GKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIW----IKIVKIV---L

Query:  SKSLFE--------CFNLTNFKATQWCSLSILF
        +K +FE         ++L  F +T W S S  F
Subjt:  SKSLFE--------CFNLTNFKATQWCSLSILF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTACAAGGGAAAGGTAAATACAGCTGATGTTCTCCAAAATAAGCTCCCTTCCTTGGCCCTTCTACCTTCAATTTGTGTCTTGTGCTCTGCCAATGGAGAATGCATTGC
CCATCTCTTCTTTCACTGCCCCTATGCTTCTCATTGTGGACATCTACAATTCCGTGAATTCAATTTTTGTTGGGTTTTCGCTTCTGCAAACATGGATATTTTGTTCCATT
TGTTATGTGGCCCAAATCTCTCTTCTAAAGCTCATCTTATTTGGATTAAGATTGTCAAAATTGTTTTATCCAAGTCATTGTTTGAATGTTTCAACTTGACCAACTTCAAA
GCAACTCAATGGTGTTCCCTTTCAATTTTATTTGGATATTATTCT
mRNA sequenceShow/hide mRNA sequence
TTTTACAAGGGAAAGGTAAATACAGCTGATGTTCTCCAAAATAAGCTCCCTTCCTTGGCCCTTCTACCTTCAATTTGTGTCTTGTGCTCTGCCAATGGAGAATGCATTGC
CCATCTCTTCTTTCACTGCCCCTATGCTTCTCATTGTGGACATCTACAATTCCGTGAATTCAATTTTTGTTGGGTTTTCGCTTCTGCAAACATGGATATTTTGTTCCATT
TGTTATGTGGCCCAAATCTCTCTTCTAAAGCTCATCTTATTTGGATTAAGATTGTCAAAATTGTTTTATCCAAGTCATTGTTTGAATGTTTCAACTTGACCAACTTCAAA
GCAACTCAATGGTGTTCCCTTTCAATTTTATTTGGATATTATTCT
Protein sequenceShow/hide protein sequence
FYKGKVNTADVLQNKLPSLALLPSICVLCSANGECIAHLFFHCPYASHCGHLQFREFNFCWVFASANMDILFHLLCGPNLSSKAHLIWIKIVKIVLSKSLFECFNLTNFK
ATQWCSLSILFGYYS