; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS007596 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007596
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA-binding protein 24
Genome locationscaffold836:304348..307456
RNA-Seq ExpressionMS007596
SyntenyMS007596
Gene Ontology termsGO:0030154 - cell differentiation (biological process)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR037366 - BOULE/DAZ family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045404.1 RNA-binding protein 24-A [Cucumis melo var. makuwa]6.6e-14590.56Show/hide
Query:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH PGPSSISGSS+SSGFLNSPFGDTTYTKVFVGGLAWETQSETMRR+FEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPA
        RANCNLASLGRPRPPIS+  GRLR PA YVGGMQPNRGT+IGNFGYQQPVSYAYQQGLAYPPYG          P+GGYNPF+GQQYLQIYG+PGS SP 
Subjt:  RANCNLASLGRPRPPISY--GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPA

Query:  IYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        IYHYGQLGQTVPGGHGYG VHGYAMPSPQI+QFSGPNVNALTSSP+PTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Subjt:  IYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

XP_004146763.1 RNA-binding protein 24-A [Cucumis sativus]3.9e-14590.56Show/hide
Query:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH PGPSSISGSS+SSGFLNSPFGDTTYTKVFVGGLAWETQSETMRR+FEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPA
        RANCNLASLGRPRPP+SY  GRLR PA YVGGMQPNRGT+IGNFGYQQPVSYAYQQGLAYPPYG          P+GGYNPF+GQQYLQIYG+PGS SP 
Subjt:  RANCNLASLGRPRPPISY--GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPA

Query:  IYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        IYHYGQLGQTVPGGHGYG VHGYAMPSPQI+QFSGPNVNALTSSP+PTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Subjt:  IYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

XP_008464801.1 PREDICTED: RNA-binding protein 24-A [Cucumis melo]6.6e-14590.56Show/hide
Query:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH PGPSSISGSS+SSGFLNSPFGDTTYTKVFVGGLAWETQSETMRR+FEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPA
        RANCNLASLGRPRPPIS+  GRLR PA YVGGMQPNRGT+IGNFGYQQPVSYAYQQGLAYPPYG          P+GGYNPF+GQQYLQIYG+PGS SP 
Subjt:  RANCNLASLGRPRPPISY--GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPA

Query:  IYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        IYHYGQLGQTVPGGHGYG VHGYAMPSPQI+QFSGPNVNALTSSP+PTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Subjt:  IYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

XP_022155905.1 RNA-binding protein 24-A [Momordica charantia]2.0e-15496.13Show/hide
Query:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPAIY
        RANCNLASLGRPRPPISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG          P+GGYNPFLGQQYLQIYGMPGSTSPAIY
Subjt:  RANCNLASLGRPRPPISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPAIY

Query:  HYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        HYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Subjt:  HYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

XP_022946505.1 RNA-binding protein 24-A [Cucurbita moschata]1.1e-14490.14Show/hide
Query:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH  GPSSISGSS+SSGFLNSPFGDTTYTKVFVGGLAWETQSETMRR+FEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGR
Subjt:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPAIY
        RANCNLASLGRPRPPISYGRLRPPA YVGGMQPNRG +IGNFGYQQPVSYAYQQGLAYPPYG          P+GGYNPF+GQQYLQIYG+PGS SPAIY
Subjt:  RANCNLASLGRPRPPISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPAIY

Query:  HYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        HYGQLGQTVPGGHGYG VHGYAMPSPQIVQF GPNVN LTSSP+PTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGS SDQTSG
Subjt:  HYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

TrEMBL top hitse value%identityAlignment
A0A1S3CME8 RNA-binding protein 24-A3.2e-14590.56Show/hide
Query:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH PGPSSISGSS+SSGFLNSPFGDTTYTKVFVGGLAWETQSETMRR+FEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPA
        RANCNLASLGRPRPPIS+  GRLR PA YVGGMQPNRGT+IGNFGYQQPVSYAYQQGLAYPPYG          P+GGYNPF+GQQYLQIYG+PGS SP 
Subjt:  RANCNLASLGRPRPPISY--GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPA

Query:  IYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        IYHYGQLGQTVPGGHGYG VHGYAMPSPQI+QFSGPNVNALTSSP+PTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Subjt:  IYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

A0A5D3CHF9 RNA-binding protein 24-A3.2e-14590.56Show/hide
Query:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH PGPSSISGSS+SSGFLNSPFGDTTYTKVFVGGLAWETQSETMRR+FEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISY--GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPA
        RANCNLASLGRPRPPIS+  GRLR PA YVGGMQPNRGT+IGNFGYQQPVSYAYQQGLAYPPYG          P+GGYNPF+GQQYLQIYG+PGS SP 
Subjt:  RANCNLASLGRPRPPISY--GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPA

Query:  IYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        IYHYGQLGQTVPGGHGYG VHGYAMPSPQI+QFSGPNVNALTSSP+PTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Subjt:  IYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

A0A6J1DNT6 RNA-binding protein 24-A9.9e-15596.13Show/hide
Query:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
Subjt:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPAIY
        RANCNLASLGRPRPPISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG          P+GGYNPFLGQQYLQIYGMPGSTSPAIY
Subjt:  RANCNLASLGRPRPPISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPAIY

Query:  HYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        HYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Subjt:  HYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

A0A6J1G3W1 RNA-binding protein 24-A5.5e-14590.14Show/hide
Query:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH  GPSSISGSS+SSGFLNSPFGDTTYTKVFVGGLAWETQSETMRR+FEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGR
Subjt:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPAIY
        RANCNLASLGRPRPPISYGRLRPPA YVGGMQPNRG +IGNFGYQQPVSYAYQQGLAYPPYG          P+GGYNPF+GQQYLQIYG+PGS SPAIY
Subjt:  RANCNLASLGRPRPPISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPAIY

Query:  HYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        HYGQLGQTVPGGHGYG VHGYAMPSPQIVQF GPNVN LTSSP+PTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGS SDQTSG
Subjt:  HYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

A0A6J1KGG8 RNA-binding protein 24-A3.0e-14388.73Show/hide
Query:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR
        MAYQH  GPSSISGSS+SSGFLNSPFGDTTYTKVFVGGLAWETQSETMRR+FEQFGEILEAVVITDKN+GRSKGYGFVTFRDPESARRAC DPTPIIDGR
Subjt:  MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGR

Query:  RANCNLASLGRPRPPISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPAIY
        RANCNLASLGRPRPPISYGRLRPPA YVGGMQPNRG + GNFGYQQPVSYAYQQGLAYPPYG          P+GGYNPF+GQQYLQIYG+PGS SPAIY
Subjt:  RANCNLASLGRPRPPISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYG--------CVPEGGYNPFLGQQYLQIYGMPGSTSPAIY

Query:  HYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        HYGQLGQTVPGGHGYG VHGY MPSPQI+QF GPNVN LTSSP+PTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGS SDQTSG
Subjt:  HYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

SwissProt top hitse value%identityAlignment
D3Z4I3 RNA-binding protein 249.0e-2838.25Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRPPAPY
        DTTYTK+FVGGL + T   ++R++FE FG+I EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG      +  R+  P   
Subjt:  DTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRPPAPY

Query:  VGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYP----PY-----GCVPEGGYNPFLGQQYLQIYGMPGSTSPAIYHYGQLGQTV-PGGHGYGTVHGYAMPS
         G  Q +       FG   P  Y Y Q    P    P+            Y  + G  Y Q Y    + + A   Y Q      P   GY T  GY+   
Subjt:  VGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYP----PY-----GCVPEGGYNPFLGQQYLQIYGMPGSTSPAIYHYGQLGQTV-PGGHGYGTVHGYAMPS

Query:  PQIVQFSGPNVNALTSS
         Q +  + P   A  ++
Subjt:  PQIVQFSGPNVNALTSS

Q6GQD3 RNA-binding protein 24-A4.0e-2837.67Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRPPAPY
        DTTYTK+FVGGL + T   ++R++FE FG+I EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG      +  R+  P   
Subjt:  DTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRPPAPY

Query:  VGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYP--------PYGCVPEGGYNPFLGQQYLQIYGMPGSTSPAIYHYGQLGQTVPGGHGYGTVHGYAMPSPQ
         G  Q +       FG   P  Y Y Q    P        P        Y  +    Y Q      + +   Y Y       P   GY T  GY    PQ
Subjt:  VGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYP--------PYGCVPEGGYNPFLGQQYLQIYGMPGSTSPAIYHYGQLGQTVPGGHGYGTVHGYAMPSPQ

Query:  IVQFSGPNVNALTSS
         +  + P   A  ++
Subjt:  IVQFSGPNVNALTSS

Q9BX46 RNA-binding protein 245.3e-2838.71Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRPPAPY
        DTTYTK+FVGGL + T   ++R++FE FGEI EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG      +  R+  P   
Subjt:  DTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRPPAPY

Query:  VGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYP----PY-----GCVPEGGYNPFLGQQYLQIYGMPGSTSPAIYHYGQLGQTV-PGGHGYGTVHGYAMPS
         G  Q +       FG   P  Y Y Q    P    P+            Y  + G  Y Q Y    + + A   Y Q      P   GY T  GY    
Subjt:  VGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYP----PY-----GCVPEGGYNPFLGQQYLQIYGMPGSTSPAIYHYGQLGQTV-PGGHGYGTVHGYAMPS

Query:  PQIVQFSGPNVNALTSS
         Q +  + P   A  ++
Subjt:  PQIVQFSGPNVNALTSS

Q9I8B3 RNA-binding protein 24-B1.2e-2738.97Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRPPAPY
        DTTYTK+FVGGL + T   ++R++FE FG+I EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG      +  R+  P   
Subjt:  DTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISYGRLRPPAPY

Query:  VGGMQPNRGTFIGNFG----YQQPVSYAYQQGLAYPPYGCVPEGGYNPFLGQQYLQIYGMPGSTSPAIYHYGQLGQTVPGGHGYGTVHGYAMPSP
         G  Q +       +G    Y  P +Y  QQGL  P          +P++            + + A   Y         G+     +GYA+P P
Subjt:  VGGMQPNRGTFIGNFG----YQQPVSYAYQQGLAYPPYGCVPEGGYNPFLGQQYLQIYGMPGSTSPAIYHYGQLGQTVPGGHGYGTVHGYAMPSP

Q9M1S3 Probable RNA-binding protein ARP13.3e-3040.38Show/hide
Query:  TSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPI
        T+S  +N  FGDT  TKVFVGGLAW+T  E M  HF ++G+ILEAV+I+DK T RSKGYGFVTF+D ++A RAC D TPII+GRRANCNLASLG      
Subjt:  TSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPI

Query:  SYGRLRP----PAPYVGGMQPNRGT--FIGNFG-YQQPVSYAYQQ-----GLAYPPYGCVPEGGYNPFLGQQYLQIYGMPGSTSPAIYHYGQLGQTVPGG
          GRLR      +P  G    NR T   +GN   +  P  +  QQ       A P YG  P     P     + Q  G  G T    Y  G   Q  P  
Subjt:  SYGRLRP----PAPYVGGMQPNRGT--FIGNFG-YQQPVSYAYQQ-----GLAYPPYGCVPEGGYNPFLGQQYLQIYGMPGSTSPAIYHYGQLGQTVPGG

Query:  HGYGTVHGYAMPSPQIV---QFSGPNVNALTSSPVPTIQAPYP------SGIPAPVAAQP
                 + P PQ      + G  V    +SP+      YP       G P P  ++P
Subjt:  HGYGTVHGYAMPSPQIV---QFSGPNVNALTSSPVPTIQAPYP------SGIPAPVAAQP

Arabidopsis top hitse value%identityAlignment
AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.7e-8857.97Show/hide
Query:  MAYQHIPGPSSISGSSTSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIID
        MAY  IP          SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RRHF+Q+G+ILEAVVITDKNTGRSKGYGFVTFRDPE+ARRAC DPTPIID
Subjt:  MAYQHIPGPSSISGSSTSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIID

Query:  GRRANCNLASLGRPRPPISY-------GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYGCVP----------EGGYNPFLGQQYLQIY
        GRRANCNLASLGR RPP+ Y       GR+RPP+PYVG +Q  RG   G+  Y QP +Y YQQG+ Y PYG  P          +G Y P++GQQYLQ+Y
Subjt:  GRRANCNLASLGRPRPPISY-------GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYGCVP----------EGGYNPFLGQQYLQIY

Query:  GMPGSTSPAIYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        G+PG+ +   Y YGQL  T+PG HGY    GY+ P   ++Q          +SP+  IQ+PYPS  P+    Q + +V +P Q++Q SGSDQT+G
Subjt:  GMPGSTSPAIYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

AT1G20880.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.7e-8857.97Show/hide
Query:  MAYQHIPGPSSISGSSTSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIID
        MAY  IP          SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RRHF+Q+G+ILEAVVITDKNTGRSKGYGFVTFRDPE+ARRAC DPTPIID
Subjt:  MAYQHIPGPSSISGSSTSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIID

Query:  GRRANCNLASLGRPRPPISY-------GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYGCVP----------EGGYNPFLGQQYLQIY
        GRRANCNLASLGR RPP+ Y       GR+RPP+PYVG +Q  RG   G+  Y QP +Y YQQG+ Y PYG  P          +G Y P++GQQYLQ+Y
Subjt:  GRRANCNLASLGRPRPPISY-------GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYGCVP----------EGGYNPFLGQQYLQIY

Query:  GMPGSTSPAIYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
        G+PG+ +   Y YGQL  T+PG HGY    GY+ P   ++Q          +SP+  IQ+PYPS  P+    Q + +V +P Q++Q SGSDQT+G
Subjt:  GMPGSTSPAIYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG

AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.9e-4543.66Show/hide
Query:  TSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRP--
        +++ +  SPFGDTT+TKVFVGGLAWET ++ MRR+F+QFGEILEAV+ITDK TG+SKGYGFVTFRD +SA RA ADP P+IDGR+ANCN+AS GRPRP  
Subjt:  TSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRP--

Query:  PISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYGCV--PEGGYNPFLGQQYL--------QIYGMPGSTSPAI-------YHYGQL
        P   G+   P+ Y GG Q +        G   PV  A    L YP YG     E GY+  L    L        Q+YG  G+TSP+        Y+Y Q 
Subjt:  PISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYGCV--PEGGYNPFLGQQYL--------QIYGMPGSTSPAI-------YHYGQL

Query:  GQTVPGGH---GYGTVH--------GYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSG
            P  H    Y   H           +PS         NV A T S VPT Q P  S   +          H+P Q  +  G
Subjt:  GQTVPGGH---GYGTVH--------GYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSG

AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.4e-10262.59Show/hide
Query:  MAYQHIPGPSSISGSSTSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIID
        MAYQ +PG          SGF  LNSPFGDTT+TKVFVGGLAWETQSET+R+HFEQ+GEILEAVVI DKNTGRSKGYGFVTFRDPE+ARRACADPTPIID
Subjt:  MAYQHIPGPSSISGSSTSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIID

Query:  GRRANCNLASLGRPRPPISY-------GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYGCV----------PEGGYNPFLGQQYLQIY
        GRRANCNLASLGRPRPP+ Y       GRLRP +PY+G +Q  RG+ IGN+ YQQP+ Y YQQG+ Y PYG             +G Y+P++GQQYLQ+Y
Subjt:  GRRANCNLASLGRPRPPISY-------GRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYGCV----------PEGGYNPFLGQQYLQIY

Query:  GMPGSTSPAIYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTS
        G+PG+ +  +Y YGQL QT+P GHGY  V GY++P   I+Q  GP V+ +T+S +P +QAPYPSGIP P   Q   +VHSP QF+Q + SDQT+
Subjt:  GMPGSTSPAIYHYGQLGQTVPGGHGYGTVHGYAMPSPQIVQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTS

AT1G78260.2 RNA-binding (RRM/RBD/RNP motifs) family protein7.0e-4446.43Show/hide
Query:  TSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPR--P
        + + +  SPFGDTTYTKVFVGGLAWET ++ MRR+FEQFGEILEAV+ITDKNTG+SKGYGFVTFR+ +SA RA ADP P+IDGR+ANCN+AS GRPR  P
Subjt:  TSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPR--P

Query:  PISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYGCV---PEGGYNPFL----------GQQYLQIYGMPGSTSPAI---------Y
        P   G+   P+ Y  G  P+  T     G   P+  A    L YP YG      + GY+  L           QQ  Q+YG  G+TSP+          Y
Subjt:  PISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYGCV---PEGGYNPFL----------GQQYLQIYGMPGSTSPAI---------Y

Query:  HYGQLGQT--VPGGHGYGTVHGYAMPSPQIVQFSGPN--VNALTSSPVPTIQ
        +YG   Q   VP  H +     Y        +FS P+  V    SS  P +Q
Subjt:  HYGQLGQT--VPGGHGYGTVHGYAMPSPQIVQFSGPN--VNALTSSPVPTIQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTATCAGCATATTCCGGGCCCGAGTTCGATATCTGGATCAAGTACCAGTTCTGGGTTCTTGAACTCTCCTTTTGGTGATACCACCTACACCAAGGTCTTTGTTGG
TGGATTAGCCTGGGAGACTCAGAGCGAAACTATGAGGCGCCACTTTGAGCAGTTTGGAGAGATTCTTGAGGCTGTTGTCATAACAGATAAGAATACAGGGAGATCCAAAG
GATATGGTTTCGTGACTTTCCGTGATCCAGAGTCTGCTAGAAGAGCTTGTGCTGATCCCACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGC
CGGCCTCGGCCACCTATATCCTATGGACGTCTAAGACCGCCTGCACCATATGTTGGAGGCATGCAGCCCAACAGGGGAACTTTTATTGGAAATTTTGGCTATCAGCAACC
GGTTTCTTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGGTGCGTCCCCGAGGGTGGATACAACCCTTTTCTGGGTCAGCAATACCTGCAGATATATGGAATGC
CTGGGTCAACGAGCCCTGCTATTTATCATTATGGACAATTAGGTCAAACGGTCCCTGGTGGTCATGGATATGGAACAGTACATGGATATGCAATGCCGAGTCCTCAGATT
GTGCAGTTTAGTGGTCCTAATGTCAATGCGCTAACATCTTCTCCAGTGCCTACTATTCAAGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAACCACAGTT
CGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTATCAGCATATTCCGGGCCCGAGTTCGATATCTGGATCAAGTACCAGTTCTGGGTTCTTGAACTCTCCTTTTGGTGATACCACCTACACCAAGGTCTTTGTTGG
TGGATTAGCCTGGGAGACTCAGAGCGAAACTATGAGGCGCCACTTTGAGCAGTTTGGAGAGATTCTTGAGGCTGTTGTCATAACAGATAAGAATACAGGGAGATCCAAAG
GATATGGTTTCGTGACTTTCCGTGATCCAGAGTCTGCTAGAAGAGCTTGTGCTGATCCCACTCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGC
CGGCCTCGGCCACCTATATCCTATGGACGTCTAAGACCGCCTGCACCATATGTTGGAGGCATGCAGCCCAACAGGGGAACTTTTATTGGAAATTTTGGCTATCAGCAACC
GGTTTCTTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGGTGCGTCCCCGAGGGTGGATACAACCCTTTTCTGGGTCAGCAATACCTGCAGATATATGGAATGC
CTGGGTCAACGAGCCCTGCTATTTATCATTATGGACAATTAGGTCAAACGGTCCCTGGTGGTCATGGATATGGAACAGTACATGGATATGCAATGCCGAGTCCTCAGATT
GTGCAGTTTAGTGGTCCTAATGTCAATGCGCTAACATCTTCTCCAGTGCCTACTATTCAAGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAACCACAGTT
CGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTAGCGGTTCTGACCAAACATCTGGG
Protein sequenceShow/hide protein sequence
MAYQHIPGPSSISGSSTSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLG
RPRPPISYGRLRPPAPYVGGMQPNRGTFIGNFGYQQPVSYAYQQGLAYPPYGCVPEGGYNPFLGQQYLQIYGMPGSTSPAIYHYGQLGQTVPGGHGYGTVHGYAMPSPQI
VQFSGPNVNALTSSPVPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG