CuGenDBv2

Gene ID	MS007607
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II D2 protein
Genome location	scaffold412:87054..87293
RNA-Seq Expression	MS007607
Synteny	MS007607
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ABG66265.1 Photosystem II D2 protein, putative [Oryza sativa Japonica Group]

5.2e-26

82.28

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAISF GPIVVFV VFLIY LG+ GWF A SFGVAAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

EYU25449.1 hypothetical protein MIMGU_mgv1a025228mg [Erythranthe guttata]

1.4e-26

81.01

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAI+F GPIVVFVYVFLIY LG+ GWF A SFG+AAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

EYU25450.1 hypothetical protein MIMGU_mgv1a019187mg, partial [Erythranthe guttata]

1.6e-27

83.54

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAI+F GPIVVFVYVFLIY LG+ GWF ALSFGVAAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

KAF7088376.1 hypothetical protein CFC21_091493 [Triticum aestivum]

5.2e-26

82.28

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAISF GPIVVFV VFLIY LG+ GWF A SFGVAAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

QWW92498.1 photosystem II protein D2 [Megaceros flagellaris]

5.2e-26

81.01

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAI+F GPI VFV VFLIY LG+ GWF ALSFGVAAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

TrEMBL top hits

e value

%identity

Alignment

A0A022QCW8 Photosystem II D2 protein

6.6e-27

81.01

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAI+F GPIVVFVYVFLIY LG+ GWF A SFG+AAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

A0A022QG40 Uncharacterized protein (Fragment)

7.9e-28

83.54

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAI+F GPIVVFVYVFLIY LG+ GWF ALSFGVAAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

A0A287PF83 Uncharacterized protein

2.5e-26

82.28

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAISF  PIVVFV VFLIY LG+FGWF A SFGVAAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

A0A3B6QCK0 Photosystem II D2 protein

2.5e-26

82.28

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAISF GPIVVFV VFLIY LG+ GWF A SFGVAAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

Q108X8 Photosystem II D2 protein, putative

2.5e-26

82.28

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAISF GPIVVFV VFLIY LG+ GWF A SFGVAAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

SwissProt top hits

e value

%identity

Alignment

A1E9Z3 Photosystem II D2 protein

2.0e-28

81.01

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAISF GPI VFV VFLIY LG+ GWF A SFGVAAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

A8Y9F5 Photosystem II D2 protein

2.0e-28

81.01

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAISF GPI VFV VFLIY LG+ GWF A SFGVAAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

B3TNB8 Photosystem II D2 protein

2.0e-28

81.01

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAISF GPI VFV VFLIY LG+ GWF A SFGVAAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

P11849 Photosystem II D2 protein

2.0e-28

81.01

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAISF GPI VFV VFLIY LG+ GWF A SFGVAAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

Q6ENJ1 Photosystem II D2 protein

2.0e-28

81.01

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAISF GPI VFV VFLIY LG+ GWF A SFGVAAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

Arabidopsis top hits

e value

%identity

Alignment

ATCG00270.1 photosystem II reaction center protein D

3.1e-29

79.75

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Query:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA
        LRPYNAI+F GPI VFV VFLIY LG+ GWF A SFGVAAIFRFILFFQGFHNWTL+PF++MGVA VLG ALLC I GA
Subjt:  LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGA

Sequences

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CDS sequence

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CTGAGACCTTATAATGCAATCTCATTCTTAGGTCCAATTGTTGTTTTTGTTTATGTATTCCTGATTTATTCATTAGGTGAGTTTGGTTGGTTCATTGCGCTTAGTTTTGG
TGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAGCCCATTTTATATTATGGGAGTTGCCGATGTATTGGGCACTGCTCTGCTAT
GCATTATTCGTGGTGCTATC

mRNA sequence

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Protein sequence

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LRPYNAISFLGPIVVFVYVFLIYSLGEFGWFIALSFGVAAIFRFILFFQGFHNWTLSPFYIMGVADVLGTALLCIIRGAI

MS007607 (gene) of Bitter gourd (TR) v1 genome