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MS007608 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007608
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein s2
Genome locationscaffold412:108273..108398
RNA-Seq ExpressionMS007608
SyntenyMS007608
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000851 - Ribosomal protein S5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV57298.1 Ribosomal_S5 domain-containing protein/Ribosomal_S5_C domain-containing protein [Cephalotus follicularis]2.5e-1180.95Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK
        +ATFDCLLK YGF+T DFWRET FTK PFQEHTDLLA PT K
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK

KAF3962057.1 hypothetical protein CMV_013389 [Castanea mollissima]7.2e-1178.57Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK
        +ATF+CLLK YGF+T DFWRET FTK PFQEHTDLLA PT K
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK

PQM41781.1 40S ribosomal protein S2-4 [Prunus yedoensis var. nudiflora]7.2e-1178.57Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK
        +ATFDCLLK YGF+T +FWRET FTK PFQEHTDLLA PT K
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK

PQQ06825.1 40S ribosomal protein S2-4 [Prunus yedoensis var. nudiflora]7.2e-1178.57Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK
        +ATFDCLLK YGF+T +FWRET FTK PFQEHTDLLA PT K
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK

XP_021813612.1 40S ribosomal protein S2-4-like [Prunus avium]7.2e-1178.57Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK
        +ATFDCLLK YGF+T +FWRET FTK PFQEHTDLLA PT K
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK

TrEMBL top hitse value%identityAlignment
A0A1Q3ANI3 Ribosomal_S5 domain-containing protein/Ribosomal_S5_C domain-containing protein1.2e-1180.95Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK
        +ATFDCLLK YGF+T DFWRET FTK PFQEHTDLLA PT K
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK

A0A2P6RWE2 Putative ribosomal protein S53.5e-1178.57Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK
        +ATFDCLLK YGF+T +FWRET FTK PFQEHTDLLA PT K
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK

A0A314UWJ4 40S ribosomal protein S2-43.5e-1178.57Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK
        +ATFDCLLK YGF+T +FWRET FTK PFQEHTDLLA PT K
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK

A0A314YEA5 40S ribosomal protein S2-43.5e-1178.57Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK
        +ATFDCLLK YGF+T +FWRET FTK PFQEHTDLLA PT K
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK

A0A6P5SIK7 40S ribosomal protein S2-4-like3.5e-1178.57Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK
        +ATFDCLLK YGF+T +FWRET FTK PFQEHTDLLA PT K
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK

SwissProt top hitse value%identityAlignment
P49688 40S ribosomal protein S2-33.2e-0963.16Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLAN
        +ATFDCL K YGF+T +FW+ET F++ P+QEHTD LA+
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLAN

Q8L8Y0 40S ribosomal protein S2-11.2e-0862.16Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLA
        +ATFDCL K YGF+T +FW+ET F++ P+QEHTD L+
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLA

Q90YS3 40S ribosomal protein S21.6e-0556.76Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLA
        +ATFD + K Y ++T D W+ET FTK P+QE TD LA
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLA

Q93VB8 40S ribosomal protein S2-21.2e-0862.16Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLA
        +ATFDCL K YGF+T +FW+ET F++ P+QEHTD L+
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLA

Q9SCM3 40S ribosomal protein S2-42.4e-0964.1Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANP
        +ATFDCL K YGF+T +FW+ET F+K P+QEHTD L  P
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANP

Arabidopsis top hitse value%identityAlignment
AT1G58380.1 Ribosomal protein S5 family protein8.5e-1062.16Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLA
        +ATFDCL K YGF+T +FW+ET F++ P+QEHTD L+
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLA

AT1G58983.1 Ribosomal protein S5 family protein8.5e-1062.16Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLA
        +ATFDCL K YGF+T +FW+ET F++ P+QEHTD L+
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLA

AT1G59359.1 Ribosomal protein S5 family protein8.5e-1062.16Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLA
        +ATFDCL K YGF+T +FW+ET F++ P+QEHTD L+
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLA

AT2G41840.1 Ribosomal protein S5 family protein2.2e-1063.16Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLAN
        +ATFDCL K YGF+T +FW+ET F++ P+QEHTD LA+
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLAN

AT3G57490.1 Ribosomal protein S5 family protein1.7e-1064.1Show/hide
Query:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANP
        +ATFDCL K YGF+T +FW+ET F+K P+QEHTD L  P
Subjt:  QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAAGCAACCTTCGATTGTCTGCTGAAAATTTATGGCTTCATAACATATGACTTTTGGAGGGAGACACACTTCACAAAATTTCCATTTCAAGAGCACACAGATTTATTGGC
GAATCCCACTAGCAAG
mRNA sequenceShow/hide mRNA sequence
CAAGCAACCTTCGATTGTCTGCTGAAAATTTATGGCTTCATAACATATGACTTTTGGAGGGAGACACACTTCACAAAATTTCCATTTCAAGAGCACACAGATTTATTGGC
GAATCCCACTAGCAAG
Protein sequenceShow/hide protein sequence
QATFDCLLKIYGFITYDFWRETHFTKFPFQEHTDLLANPTSK