; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS007616 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007616
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionrRNA N-glycosidase
Genome locationscaffold412:434066..434425
RNA-Seq ExpressionMS007616
SyntenyMS007616
Gene Ontology termsGO:0006952 - defense response (biological process)
GO:0017148 - negative regulation of translation (biological process)
GO:0035821 - modification of morphology or physiology of other organism (biological process)
GO:0030598 - rRNA N-glycosylase activity (molecular function)
GO:0090729 - toxin activity (molecular function)
InterPro domainsIPR001574 - Ribosome-inactivating protein
IPR016138 - Ribosome-inactivating protein, subdomain 1
IPR017989 - Ribosome-inactivating protein type 1/2
IPR036041 - Ribosome-inactivating protein superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156706.1 ribosome-inactivating protein bryodin I-like, partial [Momordica charantia]3.7e-0738.21Show/hide
Query:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITF---TTNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYV
        M K LV   LIL I L +P  T+EG  D++F   T    +Y + LN+FR  +  + KK  Y +   ++ V G  R+  I LT+ +   I LAIDV NVY+
Subjt:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITF---TTNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYV

Query:  VGYHTSNPKCHGSYFFNNREALA
        +G++  +P+C+ S+FFN+  ++A
Subjt:  VGYHTSNPKCHGSYFFNNREALA

XP_022158190.1 ribosome-inactivating protein bryodin I-like [Momordica charantia]6.4e-1245.45Show/hide
Query:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITFTTNIDT---YASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYV
        M+K LV C LILA+ L AP  T+EG  D++F  +  T   YA+ LN++R  +      FD  LLP   +V G++R+  I LTNS   TI+LAIDV NVYV
Subjt:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITFTTNIDT---YASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYV

Query:  VGYHTSNPKCHGSYFFNNREA
        +G++T+  +C+ S+FFN+  A
Subjt:  VGYHTSNPKCHGSYFFNNREA

XP_022158194.1 ribosome-inactivating protein bryodin I-like [Momordica charantia]1.6e-0739.67Show/hide
Query:  KSLVLCFLILAIVLTAPTYTLEGGRDITFT---TNIDTYASELNSFRQAIRTDMKKFDYFLLP-AKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVV
        K +V C LI+AI   AP  ++EG  D++FT       +Y + L  FR  +  + K    F +P  ++ V G NR+  I L++ +  TI LAIDV NVYV+
Subjt:  KSLVLCFLILAIVLTAPTYTLEGGRDITFT---TNIDTYASELNSFRQAIRTDMKKFDYFLLP-AKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVV

Query:  GYHTSNPKCHGSYFFNNREAL
        G++T  PKC  S+FFN+  A+
Subjt:  GYHTSNPKCHGSYFFNNREAL

XP_022158196.1 putative ribosome-inactivating protein, partial [Momordica charantia]5.4e-3566.67Show/hide
Query:  LCFLILAIVLTAPTYTLEGGRDITFTTNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVVGYHTSNPK
        LC L+LAI+L A  +T EG R+ITFTTNI+TYASELN+FRQA+RT  K+FDYFLLP ++ V GTNR++EI+L NS  V +KLAID+VNVYV+ YHTSNP 
Subjt:  LCFLILAIVLTAPTYTLEGGRDITFTTNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVVGYHTSNPK

Query:  CHGSYFFNNREALA
        C GSYFFN+ +A A
Subjt:  CHGSYFFNNREALA

XP_022158438.1 ribosome-inactivating protein cucurmosin-like [Momordica charantia]1.9e-1950.83Show/hide
Query:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITF-TTNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVVG
        M K  V C L LAI L APTYT++G R IT  TTNID+Y S LN+FR A+R + K  +  LL  +++V+  NRF EIS+ ++N +TI LAID+VNVYV+G
Subjt:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITF-TTNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVVG

Query:  YHTSNPKCHGSYFFNNREAL
        Y+T NP C   ++F++  A+
Subjt:  YHTSNPKCHGSYFFNNREAL

TrEMBL top hitse value%identityAlignment
A0A6J1DV53 rRNA N-glycosidase3.1e-1245.45Show/hide
Query:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITFTTNIDT---YASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYV
        M+K LV C LILA+ L AP  T+EG  D++F  +  T   YA+ LN++R  +      FD  LLP   +V G++R+  I LTNS   TI+LAIDV NVYV
Subjt:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITFTTNIDT---YASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYV

Query:  VGYHTSNPKCHGSYFFNNREA
        +G++T+  +C+ S+FFN+  A
Subjt:  VGYHTSNPKCHGSYFFNNREA

A0A6J1DW33 rRNA N-glycosidase9.0e-2050.83Show/hide
Query:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITF-TTNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVVG
        M K  V C L LAI L APTYT++G R IT  TTNID+Y S LN+FR A+R + K  +  LL  +++V+  NRF EIS+ ++N +TI LAID+VNVYV+G
Subjt:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITF-TTNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVVG

Query:  YHTSNPKCHGSYFFNNREAL
        Y+T NP C   ++F++  A+
Subjt:  YHTSNPKCHGSYFFNNREAL

A0A6J1DX83 rRNA N-glycosidase1.8e-0770.73Show/hide
Query:  EISLTNSNKVTIKLAIDVVNVYVVGYHTSNPKCHGSYFFNN
        EISLTNSN VT++LAIDV+NVYV+GY+T +P C GSYFF +
Subjt:  EISLTNSNKVTIKLAIDVVNVYVVGYHTSNPKCHGSYFFNN

A0A6J1DYP1 rRNA N-glycosidase7.9e-0839.67Show/hide
Query:  KSLVLCFLILAIVLTAPTYTLEGGRDITFT---TNIDTYASELNSFRQAIRTDMKKFDYFLLP-AKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVV
        K +V C LI+AI   AP  ++EG  D++FT       +Y + L  FR  +  + K    F +P  ++ V G NR+  I L++ +  TI LAIDV NVYV+
Subjt:  KSLVLCFLILAIVLTAPTYTLEGGRDITFT---TNIDTYASELNSFRQAIRTDMKKFDYFLLP-AKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVV

Query:  GYHTSNPKCHGSYFFNNREAL
        G++T  PKC  S+FFN+  A+
Subjt:  GYHTSNPKCHGSYFFNNREAL

A0A6J1E098 rRNA N-glycosidase2.6e-3566.67Show/hide
Query:  LCFLILAIVLTAPTYTLEGGRDITFTTNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVVGYHTSNPK
        LC L+LAI+L A  +T EG R+ITFTTNI+TYASELN+FRQA+RT  K+FDYFLLP ++ V GTNR++EI+L NS  V +KLAID+VNVYV+ YHTSNP 
Subjt:  LCFLILAIVLTAPTYTLEGGRDITFTTNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVVGYHTSNPK

Query:  CHGSYFFNNREALA
        C GSYFFN+ +A A
Subjt:  CHGSYFFNNREALA

SwissProt top hitse value%identityAlignment
P09989 Ribosome-inactivating protein alpha-trichosanthin2.6e-0837.19Show/hide
Query:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITFT---TNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYV
        M + LVL  LIL + LT P   +EG  D++F        +Y   +++ R+A+  + K +D  LL  +S + G+ R+  I LTN    TI +AIDV NVY+
Subjt:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITFT---TNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYV

Query:  VGYHTSNPKCHGSYFFNNREA
        +GY   +     SYFFN   A
Subjt:  VGYHTSNPKCHGSYFFNNREA

P24478 Ribosome-inactivating protein karasurin-C4.5e-0838.02Show/hide
Query:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITFT---TNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYV
        M + LV   LIL + LTAP   +EG  D++F        +Y   +++ R+A+  + K +D  LL  +S + G+ R+  I LTN    TI +AIDV NVYV
Subjt:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITFT---TNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYV

Query:  VGYHTSNPKCHGSYFFNNREA
        +GY   +     SYFFN   A
Subjt:  VGYHTSNPKCHGSYFFNNREA

P24817 Ribosome-inactivating protein beta-momorcharin8.5e-0738.05Show/hide
Query:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITFTTNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVVGY
        M K L+L FLI+AI +  PT   +   D++ T    TY   +  FR  +    K +D  LL   S +  + RF  ++LT+    TI +AIDV NVYVV Y
Subjt:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITFTTNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVVGY

Query:  HTSNPKCHGSYFF
         T +     SYFF
Subjt:  HTSNPKCHGSYFF

P29339 Ribosome-inactivating protein momordin II1.1e-0638.05Show/hide
Query:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITFTTNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVVGY
        M K L+L FLI+AI +  PT   +   D++ T    TY   +  FR  +    K +D  LL   S +  + RF  + LT+    TI +AIDV NVYVV Y
Subjt:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITFTTNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVVGY

Query:  HTSNPKCHGSYFF
         T +     SYFF
Subjt:  HTSNPKCHGSYFF

P33185 Ribosome-inactivating protein bryodin I2.2e-0736.36Show/hide
Query:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITFT---TNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYV
        M K LVL  LIL I L +P  T+EG  D++F        +Y   + + R+A+  + K ++  LL  +S + G+ R+  + LTN    TI +A+DV NVY+
Subjt:  MSKSLVLCFLILAIVLTAPTYTLEGGRDITFT---TNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYV

Query:  VGYHTSNPKCHGSYFFNNREA
        +GY   +     SYFFN   A
Subjt:  VGYHTSNPKCHGSYFFNNREA

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAATCGTTAGTCCTTTGTTTCCTAATTCTCGCCATCGTCCTCACCGCTCCTACGTATACTTTGGAGGGTGGGCGCGATATCACCTTCACAACAAACATAGACAC
GTATGCATCTGAGCTCAATTCTTTCAGACAAGCTATACGTACCGATATGAAAAAGTTTGATTACTTTCTACTGCCTGCCAAATCTGACGTTGTAGGAACAAATCGCTTCA
AAGAAATCAGTCTTACAAATTCGAATAAGGTTACCATCAAGCTGGCTATAGATGTAGTAAATGTTTATGTTGTTGGATATCACACCTCGAACCCAAAGTGTCATGGATCC
TACTTTTTCAATAATCGTGAAGCCCTTGCA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAAATCGTTAGTCCTTTGTTTCCTAATTCTCGCCATCGTCCTCACCGCTCCTACGTATACTTTGGAGGGTGGGCGCGATATCACCTTCACAACAAACATAGACAC
GTATGCATCTGAGCTCAATTCTTTCAGACAAGCTATACGTACCGATATGAAAAAGTTTGATTACTTTCTACTGCCTGCCAAATCTGACGTTGTAGGAACAAATCGCTTCA
AAGAAATCAGTCTTACAAATTCGAATAAGGTTACCATCAAGCTGGCTATAGATGTAGTAAATGTTTATGTTGTTGGATATCACACCTCGAACCCAAAGTGTCATGGATCC
TACTTTTTCAATAATCGTGAAGCCCTTGCA
Protein sequenceShow/hide protein sequence
MSKSLVLCFLILAIVLTAPTYTLEGGRDITFTTNIDTYASELNSFRQAIRTDMKKFDYFLLPAKSDVVGTNRFKEISLTNSNKVTIKLAIDVVNVYVVGYHTSNPKCHGS
YFFNNREALA