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MS007617 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007617
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein .
Genome locationscaffold412:441981..442280
RNA-Seq ExpressionMS007617
SyntenyMS007617
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.6e-0837.36Show/hide
Query:  WKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINKSAMELT
        WK+N+DA+W + R  GGIGW++ D     V+ G   ++ K  I ALE + I+ GL+ +N          I +ESD +EV+ L+ K  ++LT
Subjt:  WKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINKSAMELT
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]9.5e-0935.35Show/hide
Query:  PQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINKSAMELTEV
        P     WK+N++A W    N GGIGW++RD +   +   C  ++++  I  LE +AI EGL+A+ R  +C     I +ESD LE ++L+++   + TE+
Subjt:  PQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINKSAMELTEV
XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]6.8e-1550Show/hide
Query:  TPQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINKSAMELTEV
        TP     WK+N DATW+ + +AGG+GW+VRDSE RF+M  CL        KAL     LE              IKI +ESDCLEVVN+INKS+M LTEV
Subjt:  TPQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINKSAMELTEV
XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]6.1e-0837.36Show/hide
Query:  PQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINK
        P     WK+N+DA W    N  GIGW++RD +   +  GC  ++++  I  LE +AI EGL+A+ R  +C     I +ESD LE ++L+++
Subjt:  PQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINK
XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.2e-0833.98Show/hide
Query:  PQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIK----IAVESDCLEVVNLINKSAMEL
        P     WK+N+DA W    N GGIGW++RD +   +   C  ++++  I  LE +AI EGL+A+ +     I+ +    I +ESD LE ++L+++   + 
Subjt:  PQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIK----IAVESDCLEVVNLINKSAMEL

Query:  TEV
        TE+
Subjt:  TEV
TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134124.6e-0935.35Show/hide
Query:  PQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINKSAMELTEV
        P     WK+N++A W    N GGIGW++RD +   +   C  ++++  I  LE +AI EGL+A+ R  +C     I +ESD LE ++L+++   + TE+
Subjt:  PQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINKSAMELTEV
A0A6J1CQG0 uncharacterized protein LOC1110132167.8e-0937.36Show/hide
Query:  WKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINKSAMELT
        WK+N+DA+W + R  GGIGW++ D     V+ G   ++ K  I ALE + I+ GL+ +N          I +ESD +EV+ L+ K  ++LT
Subjt:  WKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINKSAMELT
A0A6J1D4B6 uncharacterized protein LOC1110171813.3e-1550Show/hide
Query:  TPQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINKSAMELTEV
        TP     WK+N DATW+ + +AGG+GW+VRDSE RF+M  CL        KAL     LE              IKI +ESDCLEVVN+INKS+M LTEV
Subjt:  TPQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINKSAMELTEV
A0A6J1DL64 uncharacterized protein LOC111022134 isoform X13.0e-0837.36Show/hide
Query:  PQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINK
        P     WK+N+DA W    N  GIGW++RD +   +  GC  ++++  I  LE +AI EGL+A+ R  +C     I +ESD LE ++L+++
Subjt:  PQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINK
A0A6J1DSV1 uncharacterized protein LOC1110236086.0e-0933.98Show/hide
Query:  PQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIK----IAVESDCLEVVNLINKSAMEL
        P     WK+N+DA W    N GGIGW++RD +   +   C  ++++  I  LE +AI EGL+A+ +     I+ +    I +ESD LE ++L+++   + 
Subjt:  PQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIK----IAVESDCLEVVNLINKSAMEL

Query:  TEV
        TE+
Subjt:  TEV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G44470.1 BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G23320.1)2.3e-0532.22Show/hide
Query:  QQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINKSAM
        ++W I + AT  Q  +  G+GW++R+S   F+  G    Q + P++  E  A+   + AL    N G  IKI  + D L ++ LIN  A+
Subjt:  QQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINKSAM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACCCCTCAAAAGCATCAACAGTGGAAAATCAACTCTGACGCTACATGGGTGCAGGCGCGGAATGCAGGTGGAATTGGTTGGGTAGTTCGTGACTCGGAGGCGCGATTCGT
CATGATGGGGTGTCTTCACCTACAAAGTAAATGGCCCATCAAAGCTTTGGAAGACCTAGCAATATTAGAGGGGCTTAAAGCGTTGAATCGAATACCTAACTGTGGAATTG
AAATCAAAATTGCGGTGGAATCAGATTGCTTGGAAGTTGTGAATCTCATCAACAAATCCGCCATGGAACTCACAGAAGTT
mRNA sequenceShow/hide mRNA sequence
ACCCCTCAAAAGCATCAACAGTGGAAAATCAACTCTGACGCTACATGGGTGCAGGCGCGGAATGCAGGTGGAATTGGTTGGGTAGTTCGTGACTCGGAGGCGCGATTCGT
CATGATGGGGTGTCTTCACCTACAAAGTAAATGGCCCATCAAAGCTTTGGAAGACCTAGCAATATTAGAGGGGCTTAAAGCGTTGAATCGAATACCTAACTGTGGAATTG
AAATCAAAATTGCGGTGGAATCAGATTGCTTGGAAGTTGTGAATCTCATCAACAAATCCGCCATGGAACTCACAGAAGTT
Protein sequenceShow/hide protein sequence
TPQKHQQWKINSDATWVQARNAGGIGWVVRDSEARFVMMGCLHLQSKWPIKALEDLAILEGLKALNRIPNCGIEIKIAVESDCLEVVNLINKSAMELTEV