CuGenDBv2

Gene ID	MS007626
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic
Genome location	scaffold13:42507..43432
RNA-Seq Expression	MS007626
Synteny	MS007626
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022138383.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia]

1.6e-106

99.51

Show/hide

Query:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK
        MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK
Subjt:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK

Query:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD
        SGKVLPKAYLKSARELVKTLR SVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD
Subjt:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD

Query:  KAEEFL
        KAEEFL
Subjt:  KAEEFL

XP_022958810.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata]

1.5e-88

84.95

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Query:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK
        M AF+QAKICP T S+LDRI  SENG KLRSRSQVVLPSQE+CRR LLCNGMS V FL FNN   PLLARAEE PNDK+EE+NGV+G IKSIFDPNERTK
Subjt:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK

Query:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD
        SGKVLPKAYLKSARE+VKTLR S+QED KDGAKFRRTADAAKESIRDYL NWLGQQ V QEESYA LEKAIRSLA FYAKAGPSAPLPE VKSDILNDLD
Subjt:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD

Query:  KAEEFL
        KAEEFL
Subjt:  KAEEFL

XP_023006140.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita maxima]

1.0e-86

83.98

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Query:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK
        M AF+QAKICP T S+ DRI  SENG KLRS SQVVLPSQE+CRR LLCNGMSLV FL FNN   P LARAEETPN K+EE+NGV+G IKSIFDPNERTK
Subjt:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK

Query:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD
        SGKVLPKAYLKSARE+VKTLR S+QED KDGAKFRRTADAAKESIRDYL NWLGQQ V QEESYA LEKAIRSLA FYAKAGPSAPLPE VKSDILNDLD
Subjt:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD

Query:  KAEEFL
        KAEEFL
Subjt:  KAEEFL

XP_023549108.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo]

1.9e-88

84.95

Show/hide

Query:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK
        M AF+QAKICP T S+LDRI  SENG KLRSRSQVVLPSQE+CRR LLCNGMSLV FL FNN   PLLARAEE PND +EE+NGV+G IKSIFDPNERTK
Subjt:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK

Query:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD
        SGKVLPKAYLKSARE+VKTLR S+QED KDGAKFRRTADAAKESIRDYL NWLGQQ V QEESYA LEKAIRSLA FYAKAGPSAPLPE VKSDILNDLD
Subjt:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD

Query:  KAEEFL
        KAEEFL
Subjt:  KAEEFL

XP_038875361.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida]

1.6e-87

83.5

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Query:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK
        MAAF+QA ICP T S+LDR  +SENG KLRSRSQVVLPSQEVCRR L+C+GMSLVVFL  NNG  P  ARAEETPND +EEDNGV+G IKSIFDPNE+TK
Subjt:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK

Query:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD
        SGKVLPKAYLKSARE+VKTLR S+QEDPKDGAKFRRTADAAKESIRDYLSNWLGQ+TV +EESY  LEKAI+SLA FYAKAGPSAPLPEAVKSDIL+DLD
Subjt:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD

Query:  KAEEFL
        KAEEFL
Subjt:  KAEEFL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BG68 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

7.3e-86

82.04

Show/hide

Query:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK
        MAAF+QAKICPRT S+LDR   SENG KL SRSQV LPSQE+CRR L+ NGMSLVVFL FNNG  P  A AEE PN+ +EEDNGV+G IKSIFDPNERTK
Subjt:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK

Query:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD
        SGKVLPKAYLKSARE+VKTLR S+QEDPKDGAKFRRTADAAKESIRDYLSNWLG+QT+ QEESY  LEKAIRSLA FYAKAGPSAPLPEAVKSDIL+DLD
Subjt:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD

Query:  KAEEFL
        KAE  L
Subjt:  KAEEFL

A0A5D3D0K6 Photosystem II D1 processing protein PSB27-H2

2.8e-85

81.55

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Query:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK
        MAAF+QAKICPRT  +LDR   SENG KL SRSQV LPSQE+CRR L+ NGMSLVVFL FNNG  P  A AEE PN+ +EEDNGV+G IKSIFDPNERTK
Subjt:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK

Query:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD
        SGKVLPKAYLKSARE+VKTLR S+QEDPKDGAKFRRTADAAKESIRDYLSNWLG+QT+ QEESY  LEKAIRSLA FYAKAGPSAPLPEAVKSDIL+DLD
Subjt:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD

Query:  KAEEFL
        KAE  L
Subjt:  KAEEFL

A0A6J1CCV0 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

7.5e-107

99.51

Show/hide

Query:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK
        MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK
Subjt:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK

Query:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD
        SGKVLPKAYLKSARELVKTLR SVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD
Subjt:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD

Query:  KAEEFL
        KAEEFL
Subjt:  KAEEFL

A0A6J1H448 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

7.1e-89

84.95

Show/hide

Query:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK
        M AF+QAKICP T S+LDRI  SENG KLRSRSQVVLPSQE+CRR LLCNGMS V FL FNN   PLLARAEE PNDK+EE+NGV+G IKSIFDPNERTK
Subjt:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK

Query:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD
        SGKVLPKAYLKSARE+VKTLR S+QED KDGAKFRRTADAAKESIRDYL NWLGQQ V QEESYA LEKAIRSLA FYAKAGPSAPLPE VKSDILNDLD
Subjt:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD

Query:  KAEEFL
        KAEEFL
Subjt:  KAEEFL

A0A6J1KWY8 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

5.1e-87

83.98

Show/hide

Query:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK
        M AF+QAKICP T S+ DRI  SENG KLRS SQVVLPSQE+CRR LLCNGMSLV FL FNN   P LARAEETPN K+EE+NGV+G IKSIFDPNERTK
Subjt:  MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTK

Query:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD
        SGKVLPKAYLKSARE+VKTLR S+QED KDGAKFRRTADAAKESIRDYL NWLGQQ V QEESYA LEKAIRSLA FYAKAGPSAPLPE VKSDILNDLD
Subjt:  SGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLD

Query:  KAEEFL
        KAEEFL
Subjt:  KAEEFL

SwissProt top hits

e value

%identity

Alignment

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

3.1e-49

72.14

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Query:  LLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAE
        L A+A E   +K +E  GVVG  K++FDPNERTKSGK LPKAYLKSARE+VKT+R S++E+PKD AKFRR+ADAAKESIRDYLSNW GQ+TVA EESY E
Subjt:  LLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAE

Query:  LEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLDKAEEFL
        LE  IR+LA FY+KAGPSAPLP+ VK++IL+DL+KAEEFL
Subjt:  LEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLDKAEEFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G05385.1 photosystem II 11 kDa protein-related

2.2e-50

72.14

Show/hide

Query:  LLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAE
        L A+A E   +K +E  GVVG  K++FDPNERTKSGK LPKAYLKSARE+VKT+R S++E+PKD AKFRR+ADAAKESIRDYLSNW GQ+TVA EESY E
Subjt:  LLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAE

Query:  LEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLDKAEEFL
        LE  IR+LA FY+KAGPSAPLP+ VK++IL+DL+KAEEFL
Subjt:  LEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLDKAEEFL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTGCATTTATGCAAGCAAAGATCTGTCCCAGAACTACTTCATCATTGGATAGAATCTTTAGAAGTGAAAATGGGGATAAACTGCGATCCAGGTCTCAAGTTGTGCT
TCCATCTCAAGAAGTTTGTAGACGTCAGTTATTGTGTAATGGCATGTCATTGGTTGTGTTTCTCGCATTTAACAATGGATCGATGCCATTGCTGGCCCGGGCCGAAGAAA
CCCCAAATGACAAGCAGGAGGAGGATAATGGAGTTGTCGGGGTGATTAAATCGATATTTGATCCAAATGAGAGAACCAAATCCGGGAAAGTATTGCCAAAGGCTTACCTG
AAGTCTGCAAGGGAGTTGGTGAAGACACTGCGTGGGTCAGTACAGGAAGACCCCAAGGATGGCGCTAAATTTAGACGAACTGCAGACGCTGCAAAGGAATCGATTCGAGA
TTATTTAAGCAATTGGTTGGGGCAGCAAACAGTTGCTCAAGAGGAATCTTACGCTGAGCTAGAGAAAGCAATAAGGTCATTGGCCAGCTTTTATGCAAAGGCTGGACCAT
CTGCGCCACTGCCAGAAGCTGTTAAATCTGATATACTGAATGATTTGGACAAGGCTGAAGAATTCTTG

mRNA sequence

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Protein sequence

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MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAFNNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYL
KSARELVKTLRGSVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAKAGPSAPLPEAVKSDILNDLDKAEEFL

MS007626 (gene) of Bitter gourd (TR) v1 genome