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MS007655 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007655
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase III subunit RPC9
Genome locationscaffold13:217485..217856
RNA-Seq ExpressionMS007655
SyntenyMS007655
Gene Ontology termsGO:0006384 - transcription initiation from RNA polymerase III promoter (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR005574 - RNA polymerase subunit RPB4/RPC9
IPR006590 - RNA polymerase Rpb4/RPC9, core
IPR010997 - HRDC-like superfamily
IPR038324 - Rpb4/RPC9 superfamily
IPR038846 - DNA-directed RNA polymerase III subunit RPC9


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593875.1 VAN3-binding protein, partial [Cucurbita argyrosperma subsp. sororia]9.8e-4093.41Show/hide
Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV
        LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQTPA YQTRE+IIEFVDKSKKYDLAKAEILNI+NLRP TPVEIFP+
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV

KAG7026218.1 DNA-directed RNA polymerase III subunit RPC9 [Cucurbita argyrosperma subsp. argyrosperma]9.8e-4093.41Show/hide
Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV
        LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQTPA YQTRE+IIEFVDKSKKYDLAKAEILNI+NLRP TPVEIFP+
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV

XP_022138348.1 uncharacterized protein LOC111009544 [Momordica charantia]4.7e-4297.8Show/hide
Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV
        LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQ RESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFP+
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV

XP_022930221.1 DNA-directed RNA polymerase III subunit RPC9-like [Cucurbita moschata]9.8e-4093.41Show/hide
Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV
        LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQTPA YQTRE+IIEFVDKSKKYDLAKAEILNI+NLRP TPVEIFP+
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV

XP_023000556.1 DNA-directed RNA polymerase III subunit RPC9-like [Cucurbita maxima]1.1e-3892.31Show/hide
Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV
        LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQTPA  QTRE+IIEFVDKSKKYDLAKAEILNI+NLRP TPVEIFP+
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV

TrEMBL top hitse value%identityAlignment
A0A6J1CCS4 DNA-directed RNA polymerase III subunit RPC92.3e-4297.8Show/hide
Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV
        LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQ RESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFP+
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV

A0A6J1EQC1 DNA-directed RNA polymerase III subunit RPC94.8e-4093.41Show/hide
Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV
        LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQTPA YQTRE+IIEFVDKSKKYDLAKAEILNI+NLRP TPVEIFP+
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV

A0A6J1H2X6 DNA-directed RNA polymerase III subunit RPC97.6e-3890.11Show/hide
Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV
        LEANAG LTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQT AC QTRE+IIEFVDKSKKYDLAKAE+LNI+NLRP TPVEIFP+
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV

A0A6J1KG58 DNA-directed RNA polymerase III subunit RPC95.3e-3992.31Show/hide
Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV
        LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQTPA  QTRE+IIEFVDKSKKYDLAKAEILNI+NLRP TPVEIFP+
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV

A0A6J1L324 DNA-directed RNA polymerase III subunit RPC97.6e-3890.11Show/hide
Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV
        LEANAG LTNFEVLDFLRSKGAAKDPTRVLAKV PSEYKVYDYLNQT AC QTRE+IIEFVDKSKKYDLAKAE+LNI+NLRP TPVEIFP+
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV

SwissProt top hitse value%identityAlignment
A0JN61 DNA-directed RNA polymerase III subunit RPC95.7e-0632.26Show/hide
Query:  EANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEI
        +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP  +Q+ E + EF+   K + L KAE L ++N RP T VEI
Subjt:  EANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEI

O35427 DNA-directed RNA polymerase III subunit RPC91.1e-0431.18Show/hide
Query:  EANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEI
        +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP   Q+   + EF+   K + L KAE L ++N RP T VEI
Subjt:  EANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEI

O75575 DNA-directed RNA polymerase III subunit RPC91.6e-0531.18Show/hide
Query:  EANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEI
        +AN+  L+N+EV   L      R +      +     +    Y+   Y+++TP  +Q+ E + EF+   K + L KAE L ++N RP T VEI
Subjt:  EANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEI

Q60482 DNA-directed RNA polymerase III subunit RPC91.9e-0635.42Show/hide
Query:  EANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPS---------EYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEI
        +AN+  L+N+EV   L      KD  R   K++ S          Y+   YL++TP  +Q+ E + EF+   K + L KAE L ++N RP T VEI
Subjt:  EANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPS---------EYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEI

Q8VHM6 DNA-directed RNA polymerase III subunit RPC91.1e-0431.18Show/hide
Query:  EANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEI
        +ANA  L+N+EV   L      R +      +     +    Y+   Y+++TP   Q+   + EF+   K + L KAE L ++N RP T VEI
Subjt:  EANAGPLTNFEVLDFL------RSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEI

Arabidopsis top hitse value%identityAlignment
AT3G28956.1 RNA polymerase II, Rpb4, core protein5.1e-2662.64Show/hide
Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV
        ++ANAG LTNFE+LDFL S+GA+KD TRV+A +  SEYKVYDYL +T A  QTRES+ +  DK K + LAKAEILNIINL P++ VE+ P+
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV

AT5G62950.1 RNA polymerase II, Rpb4, core protein3.2e-2867.03Show/hide
Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV
        ++ANAG LTNFEVLDFL S+GA+KD TRV+A +  SEYKVYDYL +T A  QTRESI +F DK K + LAKAEILNIINLRP++ VE+ P+
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV

AT5G62950.2 RNA polymerase II, Rpb4, core protein5.4e-2867.78Show/hide
Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFP
        ++ANAG LTNFEVLDFL S+GA+KD TRV+A +  SEYKVYDYL +T A  QTRESI +F DK K + LAKAEILNIINLRP++ VE+ P
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFP

AT5G62950.3 RNA polymerase II, Rpb4, core protein3.2e-2867.03Show/hide
Query:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV
        ++ANAG LTNFEVLDFL S+GA+KD TRV+A +  SEYKVYDYL +T A  QTRESI +F DK K + LAKAEILNIINLRP++ VE+ P+
Subjt:  LEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATCGCAGATTAGAGGCCAATGCAGGCCCTCTTACAAATTTTGAGGTGCTCGACTTTCTACGATCAAAGGGGGCAGCTAAGGATCCCACTAGGGTTCTTGCAAAAGTGGA
ACCATCTGAGTATAAGGTTTATGATTATTTGAATCAGACTCCTGCTTGTTATCAAACGAGAGAATCTATCATTGAGTTTGTTGACAAGTCTAAAAAGTATGATCTCGCGA
AAGCTGAAATTCTCAATATCATCAACTTGCGGCCGACTACCCCGGTTGAGATTTTTCCGGTATTT
mRNA sequenceShow/hide mRNA sequence
AATCGCAGATTAGAGGCCAATGCAGGCCCTCTTACAAATTTTGAGGTGCTCGACTTTCTACGATCAAAGGGGGCAGCTAAGGATCCCACTAGGGTTCTTGCAAAAGTGGA
ACCATCTGAGTATAAGGTTTATGATTATTTGAATCAGACTCCTGCTTGTTATCAAACGAGAGAATCTATCATTGAGTTTGTTGACAAGTCTAAAAAGTATGATCTCGCGA
AAGCTGAAATTCTCAATATCATCAACTTGCGGCCGACTACCCCGGTTGAGATTTTTCCGGTATTT
Protein sequenceShow/hide protein sequence
NRRLEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVEPSEYKVYDYLNQTPACYQTRESIIEFVDKSKKYDLAKAEILNIINLRPTTPVEIFPVF