CuGenDBv2

Gene ID	MS007719
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	U2 snRNP auxiliary factor large subunit
Genome location	scaffold13:777599..782476
RNA-Seq Expression	MS007719
Synteny	MS007719
Gene Ontology terms	GO:0006397 - mRNA processing (biological process) GO:0008380 - RNA splicing (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_021660040.1 splicing factor U2af large subunit B-like isoform X1 [Hevea brasiliensis]

1.4e-82

86.81

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFS VMAAIGGNT GPGD VVNV INHEKKFA VEMRSVEEASNAMALDGIIFE  PVKVRR SDYNPSLAATLGPSQPNPN+NL VVGLTS S 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTEA +RELLE+FGP +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

XP_021660118.1 splicing factor U2af large subunit B-like isoform X2 [Hevea brasiliensis]

1.4e-82

86.81

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFS VMAAIGGNT GPGD VVNV INHEKKFA VEMRSVEEASNAMALDGIIFE  PVKVRR SDYNPSLAATLGPSQPNPN+NL VVGLTS S 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTEA +RELLE+FGP +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

XP_021660179.1 splicing factor U2af large subunit B-like isoform X3 [Hevea brasiliensis]

1.4e-82

86.81

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFS VMAAIGGNT GPGD VVNV INHEKKFA VEMRSVEEASNAMALDGIIFE  PVKVRR SDYNPSLAATLGPSQPNPN+NL VVGLTS S 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTEA +RELLE+FGP +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

XP_021660257.1 splicing factor U2af large subunit B-like isoform X4 [Hevea brasiliensis]

1.4e-82

86.81

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFS VMAAIGGNT GPGD VVNV INHEKKFA VEMRSVEEASNAMALDGIIFE  PVKVRR SDYNPSLAATLGPSQPNPN+NL VVGLTS S 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTEA +RELLE+FGP +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

XP_021660499.1 splicing factor U2af large subunit B-like isoform X7 [Hevea brasiliensis]

1.4e-82

86.81

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFS VMAAIGGNT GPGD VVNV INHEKKFA VEMRSVEEASNAMALDGIIFE  PVKVRR SDYNPSLAATLGPSQPNPN+NL VVGLTS S 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTEA +RELLE+FGP +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

TrEMBL top hits

e value

%identity

Alignment

A0A1S4DVW4 U2 snRNP auxiliary factor large subunit

1.5e-82

86.81

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFSQVMAAIGGNT GPGD VVNV INHEKKFA VEMRSVEEASNAMALDGIIFE  PVKVRR SDYNPSLAATLGPSQPNPN+NL  VGLT  S 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTEA VRELLE+FGP +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

A0A218WNV1 U2 snRNP auxiliary factor large subunit

1.5e-82

86.81

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFSQVMAAIGGNT GPGD VVNV INHEKKFA VEMRSVEEASNAMALDGIIFE  PVKVRR SDYNPSLAATLGPSQPNPN+NL  VGLT  S 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTEA VRELLE+FGP +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

A0A2I0J2J5 U2 snRNP auxiliary factor large subunit

1.5e-82

86.81

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFSQVMAAIGGNT GPGD VVNV INHEKKFA VEMRSVEEASNAMALDGIIFE  PVKVRR SDYNPSLAATLGPSQPNPN+NL  VGLT  S 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTEA VRELLE+FGP +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

A0A6J1KRW5 U2 snRNP auxiliary factor large subunit

1.5e-82

86.81

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFSQVMAAIGGNT GPGD VVNV INHEKKFA VEMRSVEEASNAMALDGIIFE  PVKVRR SDYNPSLAATLGPSQPNPN+NL  VGLT  S 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTEA VRELLE+FGP +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

A0A7J7CVS6 U2 snRNP auxiliary factor large subunit

1.1e-82

86.26

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFSQVMAAIGGNT GPGD VVNV INHEKKFA VEMRSVEEASNAMALDGIIFE  PVKVRR SDYNPSLAATLGPSQPNPN+NL  VGLT  S 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTEA +RELLE+FGP +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

SwissProt top hits

e value

%identity

Alignment

O23212 Splicing factor U2af large subunit A

1.2e-81

82.97

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFSQVMAA+GGNT GPGD VVNV INHEKKFA VEMRSVEEASNAM+LDGIIFE  PVKVRR SDYNPSLAATLGPSQP+P++NL  VGLT  + 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTE+ VRELLE+FG  +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

Q2QZL4 Splicing factor U2af large subunit B

6.0e-81

81.32

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVA +F+QVMAAIGGNT GPGD V+NV INH+KKFA VEMRSVEEASNAMALDGI+FE  PVKVRR +DYNPSLAA LGPSQP+PN+NL  VGLT  S 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTEA VRELLE+FGP +  DLVKDRETGNSKGYAFCVYQD++VTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

Q8L716 Splicing factor U2af large subunit B

2.4e-82

83.52

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSV+TFFSQVM+AIGGNT GPGD VVNV INHEKKFA VEMRSVEEASNAMALDGII E VPVKVRR +DYNPSLAATLGPSQPNPN+NL  VGL+S S 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTE  +RELLE+FGP +  +LVKDRETGNSKGYAFCVYQD SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

Q9ZR39 Splicing factor U2af large subunit A

1.0e-80

82.42

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFS VM AIGGNT GPGD VVNV INHEKKFA VEMRSVEEASNAMALDG+IFE  PVKVRR SDYNPSLAATLGPSQP+PN+NL  VG T  S 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTE+ +RELLE+FG  +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

Q9ZR40 Splicing factor U2af large subunit B

1.9e-82

83.52

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFS VM+AIGGNT GPGD VVNV IN+EKKFA VEMRSVEEASNAMALDGIIFE  P KVRR SDYNPSLAATLGPSQPNPN+NL  VGL+  S 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTEA +RELLE+FGP +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

Arabidopsis top hits

e value

%identity

Alignment

AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor

1.7e-83

83.52

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSV+TFFSQVM+AIGGNT GPGD VVNV INHEKKFA VEMRSVEEASNAMALDGII E VPVKVRR +DYNPSLAATLGPSQPNPN+NL  VGL+S S 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTE  +RELLE+FGP +  +LVKDRETGNSKGYAFCVYQD SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor

8.6e-83

82.97

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFSQVMAA+GGNT GPGD VVNV INHEKKFA VEMRSVEEASNAM+LDGIIFE  PVKVRR SDYNPSLAATLGPSQP+P++NL  VGLT  + 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTE+ VRELLE+FG  +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

AT4G36690.2 U2 snRNP auxilliary factor, large subunit, splicing factor

8.6e-83

82.97

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFSQVMAA+GGNT GPGD VVNV INHEKKFA VEMRSVEEASNAM+LDGIIFE  PVKVRR SDYNPSLAATLGPSQP+P++NL  VGLT  + 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTE+ VRELLE+FG  +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

AT4G36690.3 U2 snRNP auxilliary factor, large subunit, splicing factor

8.6e-83

82.97

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFSQVMAA+GGNT GPGD VVNV INHEKKFA VEMRSVEEASNAM+LDGIIFE  PVKVRR SDYNPSLAATLGPSQP+P++NL  VGLT  + 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTE+ VRELLE+FG  +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

AT4G36690.4 U2 snRNP auxilliary factor, large subunit, splicing factor

8.6e-83

82.97

Show/hide

Query:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI
        QSVATFFSQVMAA+GGNT GPGD VVNV INHEKKFA VEMRSVEEASNAM+LDGIIFE  PVKVRR SDYNPSLAATLGPSQP+P++NL  VGLT  + 
Subjt:  QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSI

Query:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR
        GGLEGPDRIFVGGLP YFTE+ VRELLE+FG  +  DLVKDRETGNSKGYAFCVYQD+SVTDI CAALN IKMG+KTLTVRR
Subjt:  GGLEGPDRIFVGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

Sequences

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CDS sequence

Show/hide CDS sequence

CAGTCTGTTGCAACATTTTTCAGTCAGGTTATGGCTGCAATAGGAGGAAACACCACTGGCCCTGGAGACGTGGTTGTCAATGTTTGCATAAATCATGAGAAAAAGTTTGC
TTCTGTGGAGATGAGATCCGTTGAGGAAGCAAGTAATGCAATGGCCTTGGACGGGATCATCTTTGAGGTAGTGCCTGTTAAGGTGCGAAGATCTAGTGATTACAATCCTT
CACTTGCAGCAACACTTGGTCCGAGCCAACCGAATCCAAATATAAACCTAGATGTTGTTGGCTTAACGTCAAGTTCTATTGGTGGTCTTGAGGGGCCAGACCGCATTTTT
GTGGGTGGACTTCCTTGTTACTTCACAGAAGCGTATGTTAGAGAGTTGCTGGAGGCTTTTGGGCCCCAACAAAGTCTTGATCTGGTGAAAGATAGAGAGACTGGAAATTC
GAAAGGCTATGCATTTTGTGTTTACCAAGATATTTCAGTCACAGACATAGTATGTGCAGCCCTCAACGACATTAAAATGGGCGAGAAGACACTCACAGTTCGACGT

mRNA sequence

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Protein sequence

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QSVATFFSQVMAAIGGNTTGPGDVVVNVCINHEKKFASVEMRSVEEASNAMALDGIIFEVVPVKVRRSSDYNPSLAATLGPSQPNPNINLDVVGLTSSSIGGLEGPDRIF
VGGLPCYFTEAYVRELLEAFGPQQSLDLVKDRETGNSKGYAFCVYQDISVTDIVCAALNDIKMGEKTLTVRR

MS007719 (gene) of Bitter gourd (TR) v1 genome