; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS007722 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007722
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionC2H2-type domain-containing protein
Genome locationscaffold13:809123..809701
RNA-Seq ExpressionMS007722
SyntenyMS007722
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050710.1 hypothetical protein E6C27_scaffold560G00040 [Cucumis melo var. makuwa]7.8e-6066.67Show/hide
Query:  MAEFGRSTGQGTAADLHHLRPLLIPGGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFPPGPPFSPPPRAAPMFLPSRF
        MA+F R    GT ADLHHLRPL IPG PLVACRICDAVFSSSQALINHIGAHV+D+G    A SRR   QQQR    RFP GP F  P RA  +FLP+RF
Subjt:  MAEFGRSTGQGTAADLHHLRPLLIPGGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFPPGPPFSPPPRAAPMFLPSRF

Query:  SAPNSLGFDAAESLWPN-QLSPFARSLFREG--PPYPP--AVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKVADGAEEDDGRQLYFSKLDLTLRL
        S+PNS+GF+ AES+W N Q+SPF RS+FR+G  PPYPP   V QY  N    +E   GDCTKPYINQLEKCLPKV  G EEDD RQLY SK+DLTL+L
Subjt:  SAPNSLGFDAAESLWPN-QLSPFARSLFREG--PPYPP--AVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKVADGAEEDDGRQLYFSKLDLTLRL

KAB8495643.1 hypothetical protein FH972_025385 [Carpinus fangiana]1.4e-0835.33Show/hide
Query:  VACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFP-----------PGPPFSPPPRAAPMFLPSRFS-------APNSLGFDAA
        +ACR+CD VF S+QALINHI +H+A++ + AA+ SR     Q R+ T+R P           P     P  R   +  PS+ S          S      
Subjt:  VACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFP-----------PGPPFSPPPRAAPMFLPSRFS-------APNSLGFDAA

Query:  ESLWPNQLSPFARSLFREGPPYPPAVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKVADGAEEDDGRQLYF--SKLDLTLRL
         +L P Q+SP AR  F    P     S        A E   GDCTKPY++QLE  +  V   A+ +D     F  +KLDL L+L
Subjt:  ESLWPNQLSPFARSLFREGPPYPPAVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKVADGAEEDDGRQLYF--SKLDLTLRL

KAE8651808.1 hypothetical protein Csa_006798 [Cucumis sativus]9.2e-6165.99Show/hide
Query:  MAEFGRSTGQGTAADLHHLRPLLIPGGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFPPGPPFSPPPRAAPMFLPSRF
        MA+F R     T ADLHHLRPL IPG PLVACRICDAVFSSSQALINHIGAHV+D+G    A SRR  Q QQR    RFP GP F   PRA  +FLP+R+
Subjt:  MAEFGRSTGQGTAADLHHLRPLLIPGGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFPPGPPFSPPPRAAPMFLPSRF

Query:  SAPNSLGFDAAESLWPNQLSPFARSLFREG--PPYPP--AVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKVADGAEEDDGRQLYFSKLDLTLRL
        S+PN +GF+ AES+W NQ+SPF RS+FREG   PYPP   + QY  N  A EE   GDCTKPYINQLEKCLPKV +G EEDD RQLY SK+DLTL+L
Subjt:  SAPNSLGFDAAESLWPNQLSPFARSLFREG--PPYPP--AVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKVADGAEEDDGRQLYFSKLDLTLRL

KAG6574909.1 hypothetical protein SDJN03_25548, partial [Cucurbita argyrosperma subsp. sororia]3.0e-7580.61Show/hide
Query:  MAEFGRSTGQGTAADLHHLRPLLIPGGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFPPGPPFSPPPRAAPMFLPSRF
        MAEFGR+    TAADLHHLRPL IPG PLVACRICDAVFSSSQALINHIGAHV+D+GA++AAASRRQ+  QQRSQT R PPG     PPRA  MFLPSR+
Subjt:  MAEFGRSTGQGTAADLHHLRPLLIPGGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFPPGPPFSPPPRAAPMFLPSRF

Query:  SA-PNSLGFDAAESLWPNQLSPFARSLFREGPP-YPPAVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKV-ADGAEEDDGRQLYFSKLDLTLRL
        S  PNSLGFDAAESLWPNQLSPFARSLFREGPP YPP V QYL NW+AAEE A GDCTKPYINQLEKCLPKV   G EEDDGRQLYFSKLDL+LRL
Subjt:  SA-PNSLGFDAAESLWPNQLSPFARSLFREGPP-YPPAVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKV-ADGAEEDDGRQLYFSKLDLTLRL

XP_008224336.1 PREDICTED: uncharacterized protein LOC103324080 [Prunus mume]1.3e-0634.17Show/hide
Query:  PLLIPGGPL-VACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFPPGPPFSPPPRAAPMF-LPSRFSA--------PNSLGF--
        P  +P G   +ACRICD VF S+QALINHI +H+ DDG  A+    R  Q  Q++ T         +PP R+ P+F L + F+          N +GF  
Subjt:  PLLIPGGPL-VACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFPPGPPFSPPPRAAPMF-LPSRFSA--------PNSLGF--

Query:  DAAESLWP---NQLSPFARSLFREGPPYPPAV-SQYLGNWSAAEEAA---------AGDCTKPYINQLEKCLPKVADGAEE-DDGRQLYFSKLDLTLRL
              +P    QLSP+A             V S Y+   SA E AA         + DCT P ++QLE+ LP V    +   +  +     LDLTL+L
Subjt:  DAAESLWP---NQLSPFARSLFREGPPYPPAV-SQYLGNWSAAEEAA---------AGDCTKPYINQLEKCLPKVADGAEE-DDGRQLYFSKLDLTLRL

TrEMBL top hitse value%identityAlignment
A0A0A0LNN3 C2H2-type domain-containing protein2.9e-5264.8Show/hide
Query:  MAEFGRSTGQGTAADLHHLRPLLIPGGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFPPGPPFSPPPRAAPMFLPSRF
        MA+F R     T ADLHHLRPL IPG PLVACRICDAVFSSSQALINHIGAHV+D+G    A SRR  Q QQR    RFP GP F   PRA  +FLP+R+
Subjt:  MAEFGRSTGQGTAADLHHLRPLLIPGGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFPPGPPFSPPPRAAPMFLPSRF

Query:  SAPNSLGFDAAESLWPNQLSPFARSLFREG--PPYPP--AVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKVADGAE
        S+PN +GF+ AES+W NQ+SPF RS+FREG   PYPP   + QY  N  A EE   GDCTKPYINQLEKCLPKV  G E
Subjt:  SAPNSLGFDAAESLWPNQLSPFARSLFREG--PPYPP--AVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKVADGAE

A0A2N9E7H8 C2H2-type domain-containing protein5.7e-0829.83Show/hide
Query:  VACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQN---QQQQRSQTSRFPPGPPFSPPPRAAPMFLPSRFSAPNSLGFDAAESLW-----------
        +ACR+CD VF S+QALINHI +H+ ++ A +    R        Q+    + F P      PPR       +R      L        +           
Subjt:  VACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQN---QQQQRSQTSRFPPGPPFSPPPRAAPMFLPSRFSAPNSLGFDAAESLW-----------

Query:  -PNQLSPFARSLFREGPPYPPAVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKVADGAEEDDGRQLY--FSKLDLTLRL
         P  +SP AR+ F   P +  +  Q         E  +GDCTKPY+NQL+  + K+ D  + +D        +KLDL L+L
Subjt:  -PNQLSPFARSLFREGPPYPPAVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKVADGAEEDDGRQLY--FSKLDLTLRL

A0A5A7U6B7 C2H2-type domain-containing protein3.8e-6066.67Show/hide
Query:  MAEFGRSTGQGTAADLHHLRPLLIPGGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFPPGPPFSPPPRAAPMFLPSRF
        MA+F R    GT ADLHHLRPL IPG PLVACRICDAVFSSSQALINHIGAHV+D+G    A SRR   QQQR    RFP GP F  P RA  +FLP+RF
Subjt:  MAEFGRSTGQGTAADLHHLRPLLIPGGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFPPGPPFSPPPRAAPMFLPSRF

Query:  SAPNSLGFDAAESLWPN-QLSPFARSLFREG--PPYPP--AVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKVADGAEEDDGRQLYFSKLDLTLRL
        S+PNS+GF+ AES+W N Q+SPF RS+FR+G  PPYPP   V QY  N    +E   GDCTKPYINQLEKCLPKV  G EEDD RQLY SK+DLTL+L
Subjt:  SAPNSLGFDAAESLWPN-QLSPFARSLFREG--PPYPP--AVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKVADGAEEDDGRQLYFSKLDLTLRL

A0A5N6L1V8 C2H2-type domain-containing protein6.8e-0935.33Show/hide
Query:  VACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFP-----------PGPPFSPPPRAAPMFLPSRFS-------APNSLGFDAA
        +ACR+CD VF S+QALINHI +H+A++ + AA+ SR     Q R+ T+R P           P     P  R   +  PS+ S          S      
Subjt:  VACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFP-----------PGPPFSPPPRAAPMFLPSRFS-------APNSLGFDAA

Query:  ESLWPNQLSPFARSLFREGPPYPPAVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKVADGAEEDDGRQLYF--SKLDLTLRL
         +L P Q+SP AR  F    P     S        A E   GDCTKPY++QLE  +  V   A+ +D     F  +KLDL L+L
Subjt:  ESLWPNQLSPFARSLFREGPPYPPAVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKVADGAEEDDGRQLYF--SKLDLTLRL

A0A6J5TD05 C2H2-type domain-containing protein6.3e-0732.04Show/hide
Query:  PLLIPGGPL-VACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFPPGPPFSPPPRAAPMF-LPSRFSAPNSLGFDAAESLWPNQ
        P  +P G   +ACRICD VF S+QALINHI +H+ DDG  A+    R  Q  Q++ T         +PP R+ P+F L + F+  N         +  NQ
Subjt:  PLLIPGGPL-VACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFPPGPPFSPPPRAAPMF-LPSRFSAPNSLGFDAAESLWPNQ

Query:  LSPFARSLFREGPPYPP---------------------AVSQYLGNWSAAEEAA---------AGDCTKPYINQLEKCLPKVADGAEEDDG-RQLYFSKL
        +  FA        PYPP                       S Y+   SA E AA         + DCT P ++QL++ LP V    +      +     L
Subjt:  LSPFARSLFREGPPYPP---------------------AVSQYLGNWSAAEEAA---------AGDCTKPYINQLEKCLPKVADGAEEDDG-RQLYFSKL

Query:  DLTLRL
        DLTL+L
Subjt:  DLTLRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGAATTCGGCCGCAGCACCGGCCAAGGAACTGCCGCCGATCTCCACCATCTGCGCCCGCTTCTGATTCCCGGCGGTCCGCTCGTCGCTTGCCGAATCTGCGACGC
CGTGTTCTCCAGCAGCCAAGCCCTAATTAACCACATCGGAGCTCACGTAGCCGACGATGGCGCCGCGGCGGCGGCGGCTTCCAGAAGACAGAATCAGCAACAACAACGAA
GCCAAACATCTCGGTTTCCGCCTGGTCCGCCGTTCTCGCCGCCGCCGAGAGCGGCGCCGATGTTTTTGCCGAGCAGATTTTCGGCGCCTAATTCGCTAGGTTTTGACGCG
GCCGAATCGCTTTGGCCAAATCAACTCTCGCCATTCGCAAGAAGCCTCTTCAGGGAGGGGCCGCCGTATCCGCCGGCCGTCAGTCAGTACCTTGGAAATTGGAGTGCGGC
GGAGGAGGCGGCGGCCGGCGATTGTACGAAGCCCTATATAAATCAATTGGAGAAATGCCTACCGAAAGTCGCCGACGGAGCTGAAGAAGATGACGGTCGTCAACTGTATT
TCAGCAAACTGGACTTGACATTGAGGCTG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGAATTCGGCCGCAGCACCGGCCAAGGAACTGCCGCCGATCTCCACCATCTGCGCCCGCTTCTGATTCCCGGCGGTCCGCTCGTCGCTTGCCGAATCTGCGACGC
CGTGTTCTCCAGCAGCCAAGCCCTAATTAACCACATCGGAGCTCACGTAGCCGACGATGGCGCCGCGGCGGCGGCGGCTTCCAGAAGACAGAATCAGCAACAACAACGAA
GCCAAACATCTCGGTTTCCGCCTGGTCCGCCGTTCTCGCCGCCGCCGAGAGCGGCGCCGATGTTTTTGCCGAGCAGATTTTCGGCGCCTAATTCGCTAGGTTTTGACGCG
GCCGAATCGCTTTGGCCAAATCAACTCTCGCCATTCGCAAGAAGCCTCTTCAGGGAGGGGCCGCCGTATCCGCCGGCCGTCAGTCAGTACCTTGGAAATTGGAGTGCGGC
GGAGGAGGCGGCGGCCGGCGATTGTACGAAGCCCTATATAAATCAATTGGAGAAATGCCTACCGAAAGTCGCCGACGGAGCTGAAGAAGATGACGGTCGTCAACTGTATT
TCAGCAAACTGGACTTGACATTGAGGCTG
Protein sequenceShow/hide protein sequence
MAEFGRSTGQGTAADLHHLRPLLIPGGPLVACRICDAVFSSSQALINHIGAHVADDGAAAAAASRRQNQQQQRSQTSRFPPGPPFSPPPRAAPMFLPSRFSAPNSLGFDA
AESLWPNQLSPFARSLFREGPPYPPAVSQYLGNWSAAEEAAAGDCTKPYINQLEKCLPKVADGAEEDDGRQLYFSKLDLTLRL