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MS007727 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007727
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionChaperone protein ClpB
Genome locationscaffold13:841163..841418
RNA-Seq ExpressionMS007727
SyntenyMS007727
Gene Ontology termsGO:0009408 - response to heat (biological process)
GO:0042026 - protein refolding (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR041546 - ClpA/ClpB, AAA lid domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KRT63628.1 ATP-dependent chaperone ClpB [Candidatus Dadabacteria bacterium CSP1-2]5.4e-2165.12Show/hide
Query:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        A +RG+L CI  T + EYRKH+EKDAALERRF+++ V EP+VED+I ILR LK +YE HHGVKI+D ALI AA+LSHR ITG   P
Subjt:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

MBF8303241.1 clpB [Candidatus Dadabacteria bacterium]5.4e-2165.12Show/hide
Query:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        A +RG+L CI  T + EYRKH+EKDAALERRF+++ V EP+VED+I ILR LK +YE HHGVKI+D ALI AA+LSHR ITG   P
Subjt:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

MBW8884830.1 AAA family ATPase [Planctomycetia bacterium]3.1e-2167.44Show/hide
Query:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        A +RG+L CI  T + EYRKHVEKDAALERRF+ ++V EPTVED+IGILR LK RYE HHGVKI+D AL+ AA LSHR IT    P
Subjt:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

OIP60780.1 ATP-dependent chaperone ClpB [Nitrospirae bacterium CG2_30_53_67]1.6e-2066.28Show/hide
Query:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        A +RG+L C+  T + EYRKH+EKDAALERRF+ I V EPTVEDSI ILR LK RYE HHGV+I+D AL+ AAVLSHR IT    P
Subjt:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

TDA68533.1 ATP-dependent chaperone ClpB [Clostridia bacterium]1.6e-2065.12Show/hide
Query:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        A +RG+L CI  T +KEYR+HVEKD ALERRF+ ++V EP VEDSI ILR LK +YE HHGV+IRD AL+ AAVLSHR I+G   P
Subjt:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

TrEMBL top hitse value%identityAlignment
A0A0S8CP96 Chaperone protein ClpB9.9e-2162.79Show/hide
Query:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        A +RG+L C+  T +KEYRKH+EKDAALERRF+ + V EPTVED+I ILR LK +YE HHGV+I+D AL+ AA LSHR IT    P
Subjt:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

A0A0T5ZLC8 Chaperone protein ClpB2.6e-2165.12Show/hide
Query:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        A +RG+L CI  T + EYRKH+EKDAALERRF+++ V EP+VED+I ILR LK +YE HHGVKI+D ALI AA+LSHR ITG   P
Subjt:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

A0A2H0YJ24 Chaperone protein ClpB7.6e-2166.28Show/hide
Query:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        A +RG+L C+  T + EYRKH+EKDAALERRF+ I V EPTVEDSI ILR LK RYE HHGV+I+D AL+ AAVLSHR IT    P
Subjt:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

A0A2M7F612 Chaperone protein ClpB7.6e-2166.28Show/hide
Query:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        A +RG+L C+  T + EYRKH+EKDAALERRF+ I V EPTVEDSI ILR LK RYE HHGV+I+D AL+ AAVLSHR IT    P
Subjt:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

A0A523C078 Chaperone protein ClpB7.6e-2165.12Show/hide
Query:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        A +RG+L CI  T +KEYR+HVEKD ALERRF+ ++V EP VEDSI ILR LK +YE HHGV+IRD AL+ AAVLSHR I+G   P
Subjt:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

SwissProt top hitse value%identityAlignment
P53532 Chaperone protein ClpB5.6e-2160.71Show/hide
Query:  SRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        +RG+L  +  T + EYRK++EKDAALERRF++++V EPTVED+IGILR LK RYE HHGV+I+D AL+ AA LS+R IT    P
Subjt:  SRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

Q0E3C8 Chaperone protein ClpB3, mitochondrial7.3e-2162.65Show/hide
Query:  RGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        RG+L CI  T + EYRK++EKDAALERRF++++  EP VED+I ILR L+ RYE HHGVKI D AL+ AAVLS R ITG   P
Subjt:  RGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

Q6N1H2 Chaperone protein ClpB5.6e-2160.47Show/hide
Query:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRDALIVAAV-LSHRDITGTISP
        A +RG+L CI  T + EYRKHVEKDAAL RRF+ + V EPTVED++ ILR LK +YE+HHGV+I D+ +VAAV LS+R IT    P
Subjt:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRDALIVAAV-LSHRDITGTISP

Q73K92 Chaperone protein ClpB7.3e-2160.47Show/hide
Query:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        A +RG+L  I  T + EYRK++EKDAALERRF++++  EPTVED+I ILR L+ +YE HHGV+IRD ALI AAVLS+R IT    P
Subjt:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

Q7NFE9 Chaperone protein ClpB8.6e-2261.9Show/hide
Query:  SRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        +RG+L CI  T + EYRK++EKDAALERRF++++V +PTVED+I ILR LK RYE HHGV+I D AL+ AAVLSHR I+    P
Subjt:  SRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

Arabidopsis top hitse value%identityAlignment
AT1G74310.1 heat shock protein 1013.4e-2160.71Show/hide
Query:  SRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        +RG+L CI  T ++EYRK+VEKDAA ERRF++++V EP+V D+I ILR LK +YE HHGV+I+D ALI AA LS R ITG   P
Subjt:  SRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

AT2G25140.1 casein lytic proteinase B41.8e-1957.83Show/hide
Query:  RGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        RG+L CI  T + EYRK++EKD ALERRF+++  V+P+VED+I ILR L+ RYE HHGV I D AL+ AAVL+ R IT    P
Subjt:  RGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

AT3G48870.1 Clp ATPase5.4e-1953.49Show/hide
Query:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        A +RG+L CI  T + EYRKH+EKD ALERRF+ + V EPTVE++I IL+ L+ RYE HH ++  D AL+ AA LSH+ I+    P
Subjt:  AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

AT4G14670.1 casein lytic proteinase B28.3e-2057.14Show/hide
Query:  SRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        +RG+L  I  T ++EYR HVEKDAA ERRF+++ V EP+V D+I ILR LK +YE HHGV+I+D AL+++A LS R ITG   P
Subjt:  SRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP

AT5G15450.1 casein lytic proteinase B32.6e-2159.04Show/hide
Query:  RGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP
        RG+L CI  T + EYRK++EKD ALERRF++++V +PTVED+I ILR L+ RYE HHGV+I D AL+ AA+LS R I+G   P
Subjt:  RGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRD-ALIVAAVLSHRDITGTISP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTGCATCGAGGGGGAAGCTCTGGTGCATCAGGGTGACGATGGTGAAGGAGTATAGAAAACACGTGGAGAAGGATGCAGCGTTGGAGAGGAGATTTAAGGAAATTCACGT
GGTGGAGCCCACCGTGGAGGATTCCATTGGAATCCTTCGAGCACTGAAACGGCGTTATGAAAGACATCACGGCGTCAAGATTCGGGACGCTCTCATTGTTGCCGCCGTTC
TCTCCCACCGCGACATCACAGGTACAATATCTCCA
mRNA sequenceShow/hide mRNA sequence
GCTGCATCGAGGGGGAAGCTCTGGTGCATCAGGGTGACGATGGTGAAGGAGTATAGAAAACACGTGGAGAAGGATGCAGCGTTGGAGAGGAGATTTAAGGAAATTCACGT
GGTGGAGCCCACCGTGGAGGATTCCATTGGAATCCTTCGAGCACTGAAACGGCGTTATGAAAGACATCACGGCGTCAAGATTCGGGACGCTCTCATTGTTGCCGCCGTTC
TCTCCCACCGCGACATCACAGGTACAATATCTCCA
Protein sequenceShow/hide protein sequence
AASRGKLWCIRVTMVKEYRKHVEKDAALERRFKEIHVVEPTVEDSIGILRALKRRYERHHGVKIRDALIVAAVLSHRDITGTISP