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MS007748 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007748
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S ribosomal protein L23
Genome locationscaffold13:984312..986150
RNA-Seq ExpressionMS007748
SyntenyMS007748
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0034968 - histone lysine methylation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0018024 - histone-lysine N-methyltransferase activity (molecular function)
GO:0070180 - large ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000218 - Ribosomal protein L14P
IPR019972 - Ribosomal protein L14P, conserved site
IPR036853 - Ribosomal protein L14 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABY56104.1 ribosomal protein [Cucumis sativus]1.9e-7199.28Show/hide
Query:  VGLGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDN
        VG+GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDN
Subjt:  VGLGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDN

Query:  AGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI
        AGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI
Subjt:  AGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI

KAE8791747.1 ribosomal protein L17-like protein [Hordeum vulgare]9.3e-7198.55Show/hide
Query:  GLGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNA
        G GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNA
Subjt:  GLGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNA

Query:  GVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
        GVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Subjt:  GVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

KAF7154415.1 hypothetical protein RHSIM_Rhsim01G0261000 [Rhododendron simsii]2.5e-7198.56Show/hide
Query:  VGLGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDN
        V LGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDN
Subjt:  VGLGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDN

Query:  AGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
        AGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Subjt:  AGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

KAF9841568.1 hypothetical protein H0E87_010806 [Populus deltoides]9.3e-7196.53Show/hide
Query:  VVGL----GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFM
        VVGL    GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFM
Subjt:  VVGL----GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFM

Query:  YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
        YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Subjt:  YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

RXH78411.1 hypothetical protein DVH24_001929 [Malus domestica]1.2e-70100Show/hide
Query:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
        GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
Subjt:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV

Query:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
        IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Subjt:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

TrEMBL top hitse value%identityAlignment
A0A5N5FNP6 60S ribosomal protein L23-like5.9e-71100Show/hide
Query:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
        GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
Subjt:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV

Query:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
        IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Subjt:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

A0A6A5ND05 Putative ribosomal protein L14P5.9e-71100Show/hide
Query:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
        GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
Subjt:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV

Query:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
        IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Subjt:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

A0A6J1HWG1 60S ribosomal protein L235.9e-71100Show/hide
Query:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
        GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
Subjt:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV

Query:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
        IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Subjt:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

B0F825 Ribosomal protein9.1e-7299.28Show/hide
Query:  VGLGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDN
        VG+GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDN
Subjt:  VGLGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDN

Query:  AGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI
        AGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI
Subjt:  AGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI

M5WP13 Uncharacterized protein5.9e-71100Show/hide
Query:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
        GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
Subjt:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV

Query:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
        IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Subjt:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

SwissProt top hitse value%identityAlignment
P49690 60S ribosomal protein L237.9e-7398.53Show/hide
Query:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
        GRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
Subjt:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV

Query:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
        IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Subjt:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

Q07760 60S ribosomal protein L233.9e-7297.06Show/hide
Query:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
        GRGGSAGNKFRMSLGLPVAAT+NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKV+PAV+VRQRKPWRRKDGVFMYFEDNAGV
Subjt:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV

Query:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
        IVN KGEMKGSAITGPIGKECADLWPRIASAANAIV
Subjt:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

Q3T057 60S ribosomal protein L235.3e-6184.44Show/hide
Query:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
        GRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLP+A VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGV
Subjt:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV

Query:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAI
        IVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Subjt:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAI

Q6PC14 60S ribosomal protein L232.4e-6185.19Show/hide
Query:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
        GRGGS+G KFR+SLGLPV A +NCADNTGAKNLYIISVKGIKGRLNRLPSA VGDMVMATVKKGKP+LRKKV PAV++RQRK +RRKDGVF+YFEDNAGV
Subjt:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV

Query:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAI
        IVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Subjt:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAI

Q9XEK8 60S ribosomal protein L235.5e-6690.44Show/hide
Query:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
        GRGGS+GNKFRMSLGLPV A VNCADNTGAKNLY+IS  G++GRLNRLP+A VGDMVMATVKKGKPDLRKKV+PAVIVRQRKPWRRKDGVFMYFEDNAGV
Subjt:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV

Query:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
        IVNPKGEM  SAITGPIGKECADLWPRIASAANAIV
Subjt:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

Arabidopsis top hitse value%identityAlignment
AT1G04480.1 Ribosomal protein L14p/L23e family protein5.6e-7498.53Show/hide
Query:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
        GRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
Subjt:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV

Query:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
        IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Subjt:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

AT2G33370.1 Ribosomal protein L14p/L23e family protein5.6e-7498.53Show/hide
Query:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
        GRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
Subjt:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV

Query:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
        IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Subjt:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

AT3G04400.1 Ribosomal protein L14p/L23e family protein5.6e-7498.53Show/hide
Query:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
        GRGG++GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV
Subjt:  GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGV

Query:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
        IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
Subjt:  IVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

AT3G04400.2 Ribosomal protein L14p/L23e family protein4.6e-68100Show/hide
Query:  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGS
        MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGS
Subjt:  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGS

Query:  AITGPIGKECADLWPRIASAANAIV
        AITGPIGKECADLWPRIASAANAIV
Subjt:  AITGPIGKECADLWPRIASAANAIV

ATCG00780.1 ribosomal protein L146.1e-1233.61Show/hide
Query:  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIG
        +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G  + ++DNA V+++ +G  KG+ + G I 
Subjt:  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIG

Query:  KECADL-WPRIASAANAIV
        +E   L + +I S A  ++
Subjt:  KECADL-WPRIASAANAIV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTGTTGGTCTAGGGCGCGGAGGATCTGCGGGTAACAAGTTCAGGATGTCACTGGGTCTACCGGTGGCGGCGACGGTGAATTGTGCCGACAACACTGGAGCCAAGAACCT
GTACATCATCTCAGTGAAGGGCATCAAGGGCCGCTTGAACAGATTGCCATCGGCTTGTGTTGGCGACATGGTGATGGCCACTGTCAAAAAGGGGAAGCCCGATTTGAGGA
AGAAGGTCCTTCCGGCTGTCATTGTCAGGCAGCGCAAGCCGTGGCGGCGAAAGGATGGTGTTTTCATGTACTTCGAAGATAATGCAGGCGTGATTGTGAACCCAAAAGGA
GAGATGAAAGGTTCTGCAATTACTGGTCCCATTGGAAAGGAGTGTGCGGATTTATGGCCTAGGATTGCTAGTGCAGCCAATGCTATCGTT
mRNA sequenceShow/hide mRNA sequence
GTTGTTGGTCTAGGGCGCGGAGGATCTGCGGGTAACAAGTTCAGGATGTCACTGGGTCTACCGGTGGCGGCGACGGTGAATTGTGCCGACAACACTGGAGCCAAGAACCT
GTACATCATCTCAGTGAAGGGCATCAAGGGCCGCTTGAACAGATTGCCATCGGCTTGTGTTGGCGACATGGTGATGGCCACTGTCAAAAAGGGGAAGCCCGATTTGAGGA
AGAAGGTCCTTCCGGCTGTCATTGTCAGGCAGCGCAAGCCGTGGCGGCGAAAGGATGGTGTTTTCATGTACTTCGAAGATAATGCAGGCGTGATTGTGAACCCAAAAGGA
GAGATGAAAGGTTCTGCAATTACTGGTCCCATTGGAAAGGAGTGTGCGGATTTATGGCCTAGGATTGCTAGTGCAGCCAATGCTATCGTT
Protein sequenceShow/hide protein sequence
VVGLGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKG
EMKGSAITGPIGKECADLWPRIASAANAIV