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MS007760 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007760
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 13
Genome locationscaffold13:1061739..1062554
RNA-Seq ExpressionMS007760
SyntenyMS007760
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593806.1 DEAD-box ATP-dependent RNA helicase 13, partial [Cucurbita argyrosperma subsp. sororia]4.7e-5571.2Show/hide
Query:  PMESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGS
        PM+S+SS   QKRRPKRKR QKDPEL+RLDSL W SSIP DD LSAFIGSN+LEGGFLSLEEIDEAEYGL IP+PETVKQK  S A K  +K E DN   
Subjt:  PMESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGS

Query:  CGDASGDGDDSSKKE------MENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKK
        CG ASGDG+ S  KE      ME  K GKK KK+KK+KKK KV NE PT EE VAE+IGGSDSDG ETEVGDEMD GD LE +KK QKKKK
Subjt:  CGDASGDGDDSSKKE------MENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKK

XP_022138451.1 DEAD-box ATP-dependent RNA helicase 13 isoform X1 [Momordica charantia]1.8e-94100Show/hide
Query:  MESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGSC
        MESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGSC
Subjt:  MESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGSC

Query:  GDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKKRTMEIEESVT
        GDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKKRTMEIEESVT
Subjt:  GDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKKRTMEIEESVT

XP_022138452.1 DEAD-box ATP-dependent RNA helicase 13 isoform X2 [Momordica charantia]1.8e-94100Show/hide
Query:  MESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGSC
        MESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGSC
Subjt:  MESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGSC

Query:  GDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKKRTMEIEESVT
        GDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKKRTMEIEESVT
Subjt:  GDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKKRTMEIEESVT

XP_038874422.1 DEAD-box ATP-dependent RNA helicase 13 isoform X1 [Benincasa hispida]4.5e-5873.68Show/hide
Query:  PMESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGS
        PM+S SS   QKRR KRK+TQKDPELERLDSL WNSSIPSDD LSAFIGSN+LEGGFLSLEEIDEAEYGLAIPEP T+K+K IS A  N RK E  N  +
Subjt:  PMESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGS

Query:  CGDASGDGDDSSKKEM----ENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKK
        CGDAS D DDS  KE      N KT KKGKKEKK+KKKKKVI+E PT EE V EDIGGSD+DG ETE+GDEMDD DHLET+KK+QKK+K+
Subjt:  CGDASGDGDDSSKKEM----ENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKK

XP_038874423.1 DEAD-box ATP-dependent RNA helicase 13 isoform X2 [Benincasa hispida]4.5e-5873.68Show/hide
Query:  PMESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGS
        PM+S SS   QKRR KRK+TQKDPELERLDSL WNSSIPSDD LSAFIGSN+LEGGFLSLEEIDEAEYGLAIPEP T+K+K IS A  N RK E  N  +
Subjt:  PMESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGS

Query:  CGDASGDGDDSSKKEM----ENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKK
        CGDAS D DDS  KE      N KT KKGKKEKK+KKKKKVI+E PT EE V EDIGGSD+DG ETE+GDEMDD DHLET+KK+QKK+K+
Subjt:  CGDASGDGDDSSKKEM----ENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKK

TrEMBL top hitse value%identityAlignment
A0A0A0LNK8 Uncharacterized protein7.0e-5767.8Show/hide
Query:  ESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGSCG
        ES  S   QKRR KRK+TQKDPE ERLDSL WNSSIP DD LSAFIGSN+LEGGFLSLEEIDEAEYG+ IPEP+T K K I KA  N RK+E +NA  C 
Subjt:  ESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGSCG

Query:  DASGDGDDSSKKEME----NTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKKRTMEIEESVTGQ
        DAS   +DS  KE      NTKT KKGKKEKK+KKKKKVI+E PT E+ VA DIGG+D+DG ETE+GDEMDD DHLET+KKQQKK+K    E ++   G 
Subjt:  DASGDGDDSSKKEME----NTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKKRTMEIEESVTGQ

Query:  YYYHI
        YYYHI
Subjt:  YYYHI

A0A6J1C9R6 DEAD-box ATP-dependent RNA helicase 13 isoform X18.5e-95100Show/hide
Query:  MESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGSC
        MESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGSC
Subjt:  MESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGSC

Query:  GDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKKRTMEIEESVT
        GDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKKRTMEIEESVT
Subjt:  GDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKKRTMEIEESVT

A0A6J1CB51 DEAD-box ATP-dependent RNA helicase 13 isoform X28.5e-95100Show/hide
Query:  MESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGSC
        MESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGSC
Subjt:  MESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGSC

Query:  GDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKKRTMEIEESVT
        GDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKKRTMEIEESVT
Subjt:  GDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKKRTMEIEESVT

A0A6J1HMW3 DEAD-box ATP-dependent RNA helicase 132.9e-5571.2Show/hide
Query:  PMESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGS
        PM+S+SS   QKRRPKRKR QKDPEL+RLDSL W SSIP DD LSAFIGSN+LEGGFLSLEEIDEAEYGL IP+PETVKQK  S A K  +K E DN   
Subjt:  PMESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGS

Query:  CGDASGDGDDSSKKE------MENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKK
        CG ASGDG+ S  KE      ME  K GKK KK+KK+KKK KV NE PT EE VAE+IGGSDSDG ETEVGDEMD GD LE +KK QKKKK
Subjt:  CGDASGDGDDSSKKE------MENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKK

A0A6J1KIE8 DEAD-box ATP-dependent RNA helicase 134.7e-5368.75Show/hide
Query:  PMESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGS
        PM+S+SS   QKRRPKRKR QKDPEL+RLDSL W SSIP DD LSAFIGSN+LEGGFLSLEEIDEAEYGL IP+PETVKQK  S A K  +K E DN   
Subjt:  PMESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGS

Query:  CGDASGDGDDSSKKE------MENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKK
        CG ASGDG+ S  KE      ME  K GKK KK+KK+KKK KV NE PT EE V E IGGSD DG ETEVGDE+D GD LE +KK QK+KK+
Subjt:  CGDASGDGDDSSKKE------MENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKK

SwissProt top hitse value%identityAlignment
Q93Y39 DEAD-box ATP-dependent RNA helicase 135.6e-1135.2Show/hide
Query:  SQMLQKRRPKRKRTQKDPELERLDSLKWNSSIP--SDDP----LSAFIGSNELEGGFLSLEEIDEAEYGLAIP--EPETVKQKSISKAGKNLRKD-----
        S +++KR  +  + +++ + ER+DSL W+SSIP   DD      + F GS +L+GGFLSLEEIDEA+Y L +P  E E  ++K   +   +  +      
Subjt:  SQMLQKRRPKRKRTQKDPELERLDSLKWNSSIP--SDDP----LSAFIGSNELEGGFLSLEEIDEAEYGLAIP--EPETVKQKSISKAGKNLRKD-----

Query:  -----EHDNAGSCGDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDE
             E D  G   +   D +++ KK+ +  K  K+ KKEKK+KK+KK INE    ++  A    G D+   E +V +E
Subjt:  -----EHDNAGSCGDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDE

Arabidopsis top hitse value%identityAlignment
AT3G16840.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein4.0e-1235.2Show/hide
Query:  SQMLQKRRPKRKRTQKDPELERLDSLKWNSSIP--SDDP----LSAFIGSNELEGGFLSLEEIDEAEYGLAIP--EPETVKQKSISKAGKNLRKD-----
        S +++KR  +  + +++ + ER+DSL W+SSIP   DD      + F GS +L+GGFLSLEEIDEA+Y L +P  E E  ++K   +   +  +      
Subjt:  SQMLQKRRPKRKRTQKDPELERLDSLKWNSSIP--SDDP----LSAFIGSNELEGGFLSLEEIDEAEYGLAIP--EPETVKQKSISKAGKNLRKD-----

Query:  -----EHDNAGSCGDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDE
             E D  G   +   D +++ KK+ +  K  K+ KKEKK+KK+KK INE    ++  A    G D+   E +V +E
Subjt:  -----EHDNAGSCGDASGDGDDSSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCAATGGAATCTATGTCTTCTCAGATGTTGCAAAAGCGAAGGCCAAAGAGGAAGAGAACTCAGAAGGACCCAGAATTGGAACGTCTCGATTCACTCAAGTGGAACTCATC
GATCCCTAGCGACGACCCTTTGTCTGCTTTCATTGGTTCTAACGAACTTGAAGGAGGTTTTCTTTCGCTCGAGGAGATTGACGAAGCTGAATATGGCCTGGCGATTCCTG
AACCCGAAACAGTGAAACAGAAGTCGATATCAAAGGCTGGTAAGAATTTGAGGAAAGACGAGCACGACAATGCTGGCAGCTGTGGGGATGCATCGGGAGATGGGGATGAT
AGTAGCAAAAAGGAAATGGAGAATACGAAAACTGGCAAGAAAGGGAAAAAGGAGAAGAAAAGAAAGAAGAAAAAAAAGGTCATCAATGAAACCCCAACAGGGGAGGAATT
TGTAGCTGAAGATATAGGTGGCAGTGACAGTGATGGGACCGAGACAGAGGTCGGGGATGAAATGGACGACGGTGATCATTTGGAGACACAGAAGAAGCAGCAAAAGAAAA
AAAAGAAAAGAACGATGGAAATCGAGGAGTCAGTAACTGGTCAGTATTATTATCATATA
mRNA sequenceShow/hide mRNA sequence
CCAATGGAATCTATGTCTTCTCAGATGTTGCAAAAGCGAAGGCCAAAGAGGAAGAGAACTCAGAAGGACCCAGAATTGGAACGTCTCGATTCACTCAAGTGGAACTCATC
GATCCCTAGCGACGACCCTTTGTCTGCTTTCATTGGTTCTAACGAACTTGAAGGAGGTTTTCTTTCGCTCGAGGAGATTGACGAAGCTGAATATGGCCTGGCGATTCCTG
AACCCGAAACAGTGAAACAGAAGTCGATATCAAAGGCTGGTAAGAATTTGAGGAAAGACGAGCACGACAATGCTGGCAGCTGTGGGGATGCATCGGGAGATGGGGATGAT
AGTAGCAAAAAGGAAATGGAGAATACGAAAACTGGCAAGAAAGGGAAAAAGGAGAAGAAAAGAAAGAAGAAAAAAAAGGTCATCAATGAAACCCCAACAGGGGAGGAATT
TGTAGCTGAAGATATAGGTGGCAGTGACAGTGATGGGACCGAGACAGAGGTCGGGGATGAAATGGACGACGGTGATCATTTGGAGACACAGAAGAAGCAGCAAAAGAAAA
AAAAGAAAAGAACGATGGAAATCGAGGAGTCAGTAACTGGTCAGTATTATTATCATATA
Protein sequenceShow/hide protein sequence
PMESMSSQMLQKRRPKRKRTQKDPELERLDSLKWNSSIPSDDPLSAFIGSNELEGGFLSLEEIDEAEYGLAIPEPETVKQKSISKAGKNLRKDEHDNAGSCGDASGDGDD
SSKKEMENTKTGKKGKKEKKRKKKKKVINETPTGEEFVAEDIGGSDSDGTETEVGDEMDDGDHLETQKKQQKKKKKRTMEIEESVTGQYYYHI