CuGenDBv2

Gene ID	MS007761
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	WD repeat-containing protein 70
Genome location	scaffold13:1077527..1077776
RNA-Seq Expression	MS007761
Synteny	MS007761
Gene Ontology terms	GO:1903775 - regulation of DNA double-strand break processing (biological process) GO:2001173 - regulation of histone H2B conserved C-terminal lysine ubiquitination (biological process) GO:0005634 - nucleus (cellular component) GO:0035861 - site of double-strand break (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037937.1 WD repeat-containing protein 70 [Cucumis melo var. makuwa]

9.5e-15

69.84

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Query:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN
        +P WGSRPDIHVEN+HSDDIT LKFSSDG+         SL  VWDLRQMKKPLKVFD L  N
Subjt:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN

XP_004152006.1 WD repeat-containing protein 70 [Cucumis sativus]

9.5e-15

68.25

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Query:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN
        +P WGSRPDIH+EN+HSDDIT LKFSSDG+         SL  VWDLRQMKKPLKVFD L  N
Subjt:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN

XP_008447362.1 PREDICTED: WD repeat-containing protein 70 [Cucumis melo]

9.5e-15

69.84

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Query:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN
        +P WGSRPDIHVEN+HSDDIT LKFSSDG+         SL  VWDLRQMKKPLKVFD L  N
Subjt:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN

XP_022131253.1 WD repeat-containing protein 70 [Momordica charantia]

2.1e-14

66.67

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Query:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN
        +P WGSRPD+H+EN+HSDDIT LKFSSDG+         SL  VWDLRQMKKPLKVFD L  N
Subjt:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN

XP_038888479.1 WD repeat-containing protein 70 [Benincasa hispida]

9.5e-15

69.84

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Query:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN
        +P WGSRPDIHVEN+HSDDIT LKFSSDG+         SL  VWDLRQMKKPLKVFD L  N
Subjt:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8N1 WD_REPEATS_REGION domain-containing protein

4.6e-15

68.25

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Query:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN
        +P WGSRPDIH+EN+HSDDIT LKFSSDG+         SL  VWDLRQMKKPLKVFD L  N
Subjt:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN

A0A1S3BI49 WD repeat-containing protein 70

4.6e-15

69.84

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Query:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN
        +P WGSRPDIHVEN+HSDDIT LKFSSDG+         SL  VWDLRQMKKPLKVFD L  N
Subjt:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN

A0A5D3D627 WD repeat-containing protein 70

4.6e-15

69.84

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Query:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN
        +P WGSRPDIHVEN+HSDDIT LKFSSDG+         SL  VWDLRQMKKPLKVFD L  N
Subjt:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN

A0A6J1BST8 WD repeat-containing protein 70

1.0e-14

66.67

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Query:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN
        +P WGSRPD+H+EN+HSDDIT LKFSSDG+         SL  VWDLRQMKKPLKVFD L  N
Subjt:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN

A0A6J1ET28 WD repeat-containing protein 70

3.9e-14

68.25

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Query:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN
        +P WGSRPDIHVEN+HSDDIT LKFSSDG          SL  VWDLRQ+KKPLKVFD L  N
Subjt:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G20330.1 Transducin/WD40 repeat-like superfamily protein

5.6e-13

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Query:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTL
        +P WGSRPDI+V   H+DDIT +KFSSDGR         SL  VWDLRQMK+ LKVF+ L
Subjt:  RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTL

Sequences

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CDS sequence

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CGTCCCGAATGGGGAAGCAGGCCTGATATACACGTTGAAAATAATCATTCGGACGATATCACTGTGCTTAAGTTTTCAAGTGATGGGAGGTTCGCTGAAGGTATATTCGG
ACGATGTTCACTGTCACTTGTTTGGGATTTGCGCCAAATGAAAAAACCTCTCAAGGTGTTTGATACATTGGCACGCAAC

mRNA sequence

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CGTCCCGAATGGGGAAGCAGGCCTGATATACACGTTGAAAATAATCATTCGGACGATATCACTGTGCTTAAGTTTTCAAGTGATGGGAGGTTCGCTGAAGGTATATTCGG
ACGATGTTCACTGTCACTTGTTTGGGATTTGCGCCAAATGAAAAAACCTCTCAAGGTGTTTGATACATTGGCACGCAAC

Protein sequence

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RPEWGSRPDIHVENNHSDDITVLKFSSDGRFAEGIFGRCSLSLVWDLRQMKKPLKVFDTLARN

MS007761 (gene) of Bitter gourd (TR) v1 genome