CuGenDBv2

Gene ID	MS007762
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	SNF2 domain-containing protein / helicase domain-containing protein
Genome location	scaffold13:1077937..1078116
RNA-Seq Expression	MS007762
Synteny	MS007762
Gene Ontology terms	GO:0006325 - chromatin organization (biological process) GO:0010390 - histone monoubiquitination (biological process) GO:0005634 - nucleus (cellular component) GO:0004386 - helicase activity (molecular function) GO:0004842 - ubiquitin-protein transferase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6592938.1 putative helicase CHR10, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-16

76.67

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Query:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL
        M+YERRL+AAAKLILL D+  DN  ++CPD GV ATLKPYQVEGV+WLIRRY LGVNVIL
Subjt:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL

KAG7025346.1 putative helicase CHR10, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-16

76.67

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Query:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL
        M+YERRL+AAAKLILL D+  DN  ++CPD GV ATLKPYQVEGV+WLIRRY LGVNVIL
Subjt:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL

XP_022153190.1 probable helicase CHR10 [Momordica charantia]

4.5e-22

91.67

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Query:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL
        MDYERRLRAAAKLILLDD+R DNL EACPDFGV ATLKPYQVEGV+WLIRRYLLGVNVIL
Subjt:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL

XP_022959610.1 probable helicase CHR10 isoform X1 [Cucurbita moschata]

1.6e-16

76.67

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Query:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL
        M+YERRL+AAAKLILL D+  DN  ++CPD GV ATLKPYQVEGV+WLIRRY LGVNVIL
Subjt:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL

XP_038876157.1 probable helicase CHR10 isoform X1 [Benincasa hispida]

5.7e-17

78.33

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Query:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL
        M+YE RL+AAAKLILL D+  DN  E+CPDFGV ATLKPYQVEGV+WLIRRY LGVNVIL
Subjt:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CAH8 probable helicase CHR10 isoform X2

4.8e-14

71.67

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Query:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL
        M+YERRL+AAAKLILL D+  DN   +  DFGV ATLKPYQ++GV WLIRRY LGVNVIL
Subjt:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL

A0A1S3CC69 probable helicase CHR10 isoform X1

4.8e-14

71.67

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Query:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL
        M+YERRL+AAAKLILL D+  DN   +  DFGV ATLKPYQ++GV WLIRRY LGVNVIL
Subjt:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL

A0A6J1DG36 probable helicase CHR10

2.2e-22

91.67

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Query:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL
        MDYERRLRAAAKLILLDD+R DNL EACPDFGV ATLKPYQVEGV+WLIRRYLLGVNVIL
Subjt:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL

A0A6J1H6S3 probable helicase CHR10 isoform X1

8.0e-17

76.67

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Query:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL
        M+YERRL+AAAKLILL D+  DN  ++CPD GV ATLKPYQVEGV+WLIRRY LGVNVIL
Subjt:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL

A0A6J1KW01 probable helicase CHR10 isoform X1

1.4e-16

76.67

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Query:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL
        M+YERRL+AAAKLILL D+  DN  ++CPD GV ATLKPYQVEGV+WLIRRY LGVNVIL
Subjt:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL

SwissProt top hits

e value

%identity

Alignment

F4IV45 Probable helicase CHR10

3.2e-15

63.33

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Query:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL
        M+YERRL AAA++IL  +A+  N    C +FGV ATLKP+QVEGV WLI++YLLGVNV+L
Subjt:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL

Arabidopsis top hits

e value

%identity

Alignment

AT2G44980.1 SNF2 domain-containing protein / helicase domain-containing protein

2.3e-16

63.33

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Query:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL
        M+YERRL AAA++IL  +A+  N    C +FGV ATLKP+QVEGV WLI++YLLGVNV+L
Subjt:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL

AT2G44980.2 SNF2 domain-containing protein / helicase domain-containing protein

2.3e-16

63.33

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Query:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL
        M+YERRL AAA++IL  +A+  N    C +FGV ATLKP+QVEGV WLI++YLLGVNV+L
Subjt:  MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL

Sequences

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CDS sequence

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ATGGATTACGAGAGAAGGCTCAGAGCCGCTGCGAAGCTCATACTTCTCGACGATGCTCGCATCGATAACTTGCAGGAAGCCTGCCCGGACTTCGGAGTTGTGGCGACTCT
GAAACCCTACCAAGTCGAAGGAGTTATATGGCTTATCAGGCGATATCTTCTCGGCGTCAACGTCATTCTT

mRNA sequence

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ATGGATTACGAGAGAAGGCTCAGAGCCGCTGCGAAGCTCATACTTCTCGACGATGCTCGCATCGATAACTTGCAGGAAGCCTGCCCGGACTTCGGAGTTGTGGCGACTCT
GAAACCCTACCAAGTCGAAGGAGTTATATGGCTTATCAGGCGATATCTTCTCGGCGTCAACGTCATTCTT

Protein sequence

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MDYERRLRAAAKLILLDDARIDNLQEACPDFGVVATLKPYQVEGVIWLIRRYLLGVNVIL

MS007762 (gene) of Bitter gourd (TR) v1 genome