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MS007813 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007813
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsmall EDRK-rich factor 2-like
Genome locationscaffold13:1489011..1489292
RNA-Seq ExpressionMS007813
SyntenyMS007813
Gene Ontology termsNA
InterPro domainsIPR007513 - Uncharacterised protein family SERF, N-terminal
IPR040211 - Small EDRK-rich factor 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033303.1 small EDRK-rich factor 2 [Cucumis melo var. makuwa]6.4e-1563.83Show/hide
Query:  SPRGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
        S RGNQREKDRERAQAR+  KGK KDDGLTPEQRRE                          RDAKALQEKAAKKAAQAASGG+SSGGK+S KK
Subjt:  SPRGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
TYK21602.1 small EDRK-rich factor 2 [Cucumis melo var. makuwa]6.4e-1563.83Show/hide
Query:  SPRGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
        S RGNQREKDRERAQAR+  KGK KDDGLTPEQRRE                          RDAKALQEKAAKKAAQAASGG+SSGGK+S KK
Subjt:  SPRGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
XP_008457241.1 PREDICTED: small EDRK-rich factor 2 [Cucumis melo]8.3e-1564.13Show/hide
Query:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
        RGNQREKDRERAQAR+  KGK KDDGLTPEQRRE                          RDAKALQEKAAKKAAQAASGG+SSGGK+S KK
Subjt:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
XP_022138397.1 small EDRK-rich factor 2-like [Momordica charantia]1.2e-1870.65Show/hide
Query:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
        RGNQREKDRERAQAR+TAKGKGKDDGLTPEQRRE                          RDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
Subjt:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
XP_038876165.1 small EDRK-rich factor 2 [Benincasa hispida]3.7e-1564.13Show/hide
Query:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
        RGNQREKDRER+QAR++ KGK KDDGLTPEQRRE                          RDAKALQEKAAKKAAQAASGG+SSGGKSS KK
Subjt:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
TrEMBL top hitse value%identityAlignment
A0A1S3C551 small EDRK-rich factor 24.0e-1564.13Show/hide
Query:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
        RGNQREKDRERAQAR+  KGK KDDGLTPEQRRE                          RDAKALQEKAAKKAAQAASGG+SSGGK+S KK
Subjt:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
A0A5A7SS85 Small EDRK-rich factor 23.1e-1563.83Show/hide
Query:  SPRGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
        S RGNQREKDRERAQAR+  KGK KDDGLTPEQRRE                          RDAKALQEKAAKKAAQAASGG+SSGGK+S KK
Subjt:  SPRGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
A0A5D3DDD9 Small EDRK-rich factor 23.1e-1563.83Show/hide
Query:  SPRGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
        S RGNQREKDRERAQAR+  KGK KDDGLTPEQRRE                          RDAKALQEKAAKKAAQAASGG+SSGGK+S KK
Subjt:  SPRGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
A0A6J1CB00 small EDRK-rich factor 2-like6.0e-1970.65Show/hide
Query:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
        RGNQREKDRERAQAR+TAKGKGKDDGLTPEQRRE                          RDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
Subjt:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
A0A6J1KZW7 small EDRK-rich factor 2-like2.6e-1464.13Show/hide
Query:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
        RGNQREKDRERAQAR+  KGK KDDGLTPEQRRE                          RDAKALQEKAAKKAAQAAS G+SSGGKSS KK
Subjt:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24100.1 Uncharacterised protein family SERF8.3e-1353.76Show/hide
Query:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDS--SGGKSSNK
        RG+QRE+DRERA AR+  KGK KDDGLTPEQRRE                          RDAKALQEK AKKAAQAA+   S   GGK +NK
Subjt:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDS--SGGKSSNK
AT4G13615.1 Uncharacterised protein family SERF1.2e-1152.13Show/hide
Query:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQA--ASGGDSSGGKSSNKK
        RG+QRE+DRERA AR+  KGK  DDGLTPEQRRE                          RD KALQEKAAKKAAQA  AS G ++GGK +  K
Subjt:  RGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQA--ASGGDSSGGKSSNKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTCCACGCGGAAACCAGAGGGAGAAGGACCGAGAGAGGGCCCAAGCTCGCAGCACCGCCAAGGGCAAGGGCAAGGATGATGGTTTGACCCCCGAGCAGCGCCGTGAGAG
GTTTATTCGTCTCTCGTTTTGCTTCTTGTTTCTTTGGTTTTTGATTTGGTATATGATTGATTTTGTGTTCTTGGTTAGGGATGCGAAGGCGCTGCAAGAGAAGGCGGCGA
AGAAGGCGGCTCAGGCGGCATCGGGAGGTGATTCGTCCGGAGGTAAAAGTAGCAATAAGAAA
mRNA sequenceShow/hide mRNA sequence
TCTCCACGCGGAAACCAGAGGGAGAAGGACCGAGAGAGGGCCCAAGCTCGCAGCACCGCCAAGGGCAAGGGCAAGGATGATGGTTTGACCCCCGAGCAGCGCCGTGAGAG
GTTTATTCGTCTCTCGTTTTGCTTCTTGTTTCTTTGGTTTTTGATTTGGTATATGATTGATTTTGTGTTCTTGGTTAGGGATGCGAAGGCGCTGCAAGAGAAGGCGGCGA
AGAAGGCGGCTCAGGCGGCATCGGGAGGTGATTCGTCCGGAGGTAAAAGTAGCAATAAGAAA
Protein sequenceShow/hide protein sequence
SPRGNQREKDRERAQARSTAKGKGKDDGLTPEQRRERFIRLSFCFLFLWFLIWYMIDFVFLVRDAKALQEKAAKKAAQAASGGDSSGGKSSNKK