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MS007874 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007874
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationscaffold13:1987436..1987588
RNA-Seq ExpressionMS007874
SyntenyMS007874
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044675 - E3 ubiquitin-protein ligase RING1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8812582.1 RING-H2 finger protein ATL3 [Hordeum vulgare]8.5e-0655Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLC
        +C+ A+V GE    LP   HCFH EC+D WL+SQP+C LC
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLC

KAG2672040.1 hypothetical protein I3760_13G019900 [Carya illinoinensis]1.7e-0656.82Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV
        VCL  ++ GE   KLPK +HCFH  CIDVW QS  TC LC N +
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV

KAG5231047.1 RING/U-box superfamily protein [Salix suchowensis]8.5e-0656.82Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV
        VCL   V GE   +L K +HCFH  CID W QS PTC LC N V
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV

KAG6680066.1 hypothetical protein I3842_13G021300 [Carya illinoinensis]1.7e-0656.82Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV
        VCL  ++ GE   KLPK +HCFH  CIDVW QS  TC LC N +
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV

XP_040380359.1 RING-H2 finger protein ATL66-like [Oryza brachyantha]6.5e-0652.5Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLC
        +C+ A+V+GE    LP   HCFH +C+D WL+SQP+C LC
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLC

TrEMBL top hitse value%identityAlignment
A0A0E0L3M7 RING-type E3 ubiquitin transferase3.2e-0652.5Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLC
        +C+ A+V+GE    LP   HCFH +C+D WL+SQP+C LC
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLC

A0A5C7HZU3 RING-type E3 ubiquitin transferase4.1e-0656.82Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV
        VCL  I  G+   +LP+  HCFH ECIDVW QS+ TC LC N V
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV

A0A6N2N9L1 RING-type E3 ubiquitin transferase1.4e-0656.52Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHVVV
        VCL   V GE   +L K +HCFH  CID W QS PTC LC N V V
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHVVV

F2CU03 RING-type E3 ubiquitin transferase4.1e-0655Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLC
        +C+ A+V GE    LP   HCFH EC+D WL+SQP+C LC
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLC

J3M812 RING-type E3 ubiquitin transferase3.2e-0652.5Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLC
        +C+ A+V+GE    LP   HCFH +C+D WL+SQP+C LC
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLC

SwissProt top hitse value%identityAlignment
P0C035 RING-H2 finger protein ATL601.0e-0650Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV
        VCL  +V G+ +  LP+ +H FH +CID+W QS  TC LC N V
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV

P0CH01 Putative RING-H2 finger protein ATL21A3.0e-0647.62Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGN
        +CL      E    +P+ DHCFH ECIDVWL+   +C LC N
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGN

Q9LRB7 E3 ubiquitin-protein ligase EL58.0e-0751.06Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHVVVP
        VCL  +  GE +  LP+  H FH EC+D+WL S  TC LC   VVVP
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHVVVP

Q9LUL6 Putative RING-H2 finger protein ATL611.4e-0650Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV
        VCL  +  G+ +  LP  DH FH ECID WLQS  TC +C   V
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV

Q9XF63 RING-H2 finger protein ATL33.2e-0847.06Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHVVVPFSSS
        +CL  +V G+ +  LPK +H FH ECID+W QS  TC +C N V+ P  +S
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHVVVPFSSS

Arabidopsis top hitse value%identityAlignment
AT1G53820.1 RING/U-box superfamily protein7.4e-0850Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV
        VCL  +V G+ +  LP+ +H FH +CID+W QS  TC LC N V
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV

AT1G72310.1 RING/U-box superfamily protein2.3e-0947.06Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHVVVPFSSS
        +CL  +V G+ +  LPK +H FH ECID+W QS  TC +C N V+ P  +S
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHVVVPFSSS

AT2G46494.1 RING/U-box superfamily protein2.2e-0747.62Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGN
        +CL   V  E    +P+ DHCFH +CIDVWL+   +C LC N
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGN

AT2G46495.1 RING/U-box superfamily protein2.2e-0747.62Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGN
        +CL      E    +P+ DHCFH ECIDVWL+   +C LC N
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGN

AT3G14320.1 Zinc finger, C3HC4 type (RING finger) family protein9.7e-0850Show/hide
Query:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV
        VCL  +  G+ +  LP  DH FH ECID WLQS  TC +C   V
Subjt:  VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGTGTCTGCAGGCGATTGTCATCGGCGAGTTATCTTGGAAGCTACCCAAGTTTGATCACTGCTTCCATGGTGAGTGTATTGATGTGTGGCTTCAGTCCCAACCCACATG
CCTGCTGTGTGGAAACCATGTTGTTGTTCCATTTTCGTCTTCC
mRNA sequenceShow/hide mRNA sequence
GTGTGTCTGCAGGCGATTGTCATCGGCGAGTTATCTTGGAAGCTACCCAAGTTTGATCACTGCTTCCATGGTGAGTGTATTGATGTGTGGCTTCAGTCCCAACCCACATG
CCTGCTGTGTGGAAACCATGTTGTTGTTCCATTTTCGTCTTCC
Protein sequenceShow/hide protein sequence
VCLQAIVIGELSWKLPKFDHCFHGECIDVWLQSQPTCLLCGNHVVVPFSSS