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MS007890 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007890
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA helicase
Genome locationscaffold13:2139453..2139648
RNA-Seq ExpressionMS007890
SyntenyMS007890
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135864.1 DEAD-box ATP-dependent RNA helicase 35 [Cucumis sativus]4.3e-0760.61Show/hide
Query:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
        MDV+MKD+K++EE+D+Y EYVP AKRRA+E+Q+    + +   L  +LEKSRLAEAK SLLVKA Q
Subjt:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
XP_008461142.1 PREDICTED: DEAD-box ATP-dependent RNA helicase 35 [Cucumis melo]1.5e-0762.12Show/hide
Query:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
        MDV+MKD+K++EE+DDY EYVP AKRRA+E+Q+    + +   L  +LEKSRLAEAK SLLVKA Q
Subjt:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
XP_022148436.1 DEAD-box ATP-dependent RNA helicase 35 [Momordica charantia]1.9e-0760.61Show/hide
Query:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
        MDV+MKD+KN+EE+D+Y EYVP AKRRA+E+Q+    + +   L  +LEKSRLAEAK SLL+KA Q
Subjt:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
XP_023004285.1 DEAD-box ATP-dependent RNA helicase 35 [Cucurbita maxima]4.3e-0762.12Show/hide
Query:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
        MDV MKD+K+MEE++DY EYVP AKRRA+E+Q+    + +   L  +LEKSRLAEAK SLLVKA Q
Subjt:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
XP_038885065.1 DEAD-box ATP-dependent RNA helicase 35 [Benincasa hispida]1.5e-0762.12Show/hide
Query:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
        MDV+MKD+K++EE+DDY EYVP AKRRA+E+Q+    + +   L  +LEKSRLAEAK SLLVKA Q
Subjt:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
TrEMBL top hitse value%identityAlignment
A0A1S3CDK5 RNA helicase7.2e-0862.12Show/hide
Query:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
        MDV+MKD+K++EE+DDY EYVP AKRRA+E+Q+    + +   L  +LEKSRLAEAK SLLVKA Q
Subjt:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
A0A5A7UYT9 RNA helicase7.2e-0862.12Show/hide
Query:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
        MDV+MKD+K++EE+DDY EYVP AKRRA+E+Q+    + +   L  +LEKSRLAEAK SLLVKA Q
Subjt:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
A0A6J1D5D5 RNA helicase9.4e-0860.61Show/hide
Query:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
        MDV+MKD+KN+EE+D+Y EYVP AKRRA+E+Q+    + +   L  +LEKSRLAEAK SLL+KA Q
Subjt:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
A0A6J1H714 RNA helicase2.1e-0762.12Show/hide
Query:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
        MDV MKD+K+MEE++DY EYVP AKRRA+E+Q+    + +   L  +LEKSRLAEAK SLLVKA Q
Subjt:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
A0A6J1KU58 RNA helicase2.1e-0762.12Show/hide
Query:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
        MDV MKD+K+MEE++DY EYVP AKRRA+E+Q+    + +   L  +LEKSRLAEAK SLLVKA Q
Subjt:  MDVKMKDKKNMEEKDDYAEYVP-AKRRAVESQRFFCPRERLLPL-SKLEKSRLAEAKLSLLVKAFQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTAAAAATGAAGGACAAAAAGAACATGGAAGAGAAAGATGACTATGCTGAATATGTTCCCGCAAAGCGTAGAGCAGTGGAATCTCAAAGATTTTTCTGCCCAAG
GGAAAGGCTTCTGCCCTTGTCTAAGTTGGAGAAATCAAGGCTTGCTGAAGCCAAGCTCAGTCTCCTTGTAAAGGCATTTCAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGTAAAAATGAAGGACAAAAAGAACATGGAAGAGAAAGATGACTATGCTGAATATGTTCCCGCAAAGCGTAGAGCAGTGGAATCTCAAAGATTTTTCTGCCCAAG
GGAAAGGCTTCTGCCCTTGTCTAAGTTGGAGAAATCAAGGCTTGCTGAAGCCAAGCTCAGTCTCCTTGTAAAGGCATTTCAG
Protein sequenceShow/hide protein sequence
MDVKMKDKKNMEEKDDYAEYVPAKRRAVESQRFFCPRERLLPLSKLEKSRLAEAKLSLLVKAFQ