; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS007894 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007894
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionupstream activation factor subunit spp27-like
Genome locationscaffold13:2167888..2169701
RNA-Seq ExpressionMS007894
SyntenyMS007894
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593744.1 hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia]3.8e-4672.55Show/hide
Query:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATS----TESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAV
        MASGL+NGTRLFR C TLLDSLKS T A YSSAA+ S       PK ++KAS A +    +E+G KKE NRS GI K VQVSPAL  FLGMSE+SR+EAV
Subjt:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATS----TESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAV

Query:  KQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS
        KQIWSYIKLNNLQNP +KR I+CDEKLKAIFDGR+ VGFLEIGKLLSPHFVKS
Subjt:  KQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS

XP_022155717.1 uncharacterized protein LOC111022777 [Momordica charantia]2.9e-46100Show/hide
Query:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIW
        MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIW
Subjt:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIW

Query:  SYIKLNNLQ
        SYIKLNNLQ
Subjt:  SYIKLNNLQ

XP_023000110.1 upstream activation factor subunit spp27-like [Cucurbita maxima]3.8e-4673.2Show/hide
Query:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATS----TESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAV
        MASGL+NGTRLFR C TLLDSLKS T A YSSAA+ S       PK +LKAS A +    +E+G KKE NRS GIFK VQVSPAL  FLGMSE+SRSEAV
Subjt:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATS----TESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAV

Query:  KQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS
        KQIWSYIKLN+LQNP +KR I+CDEKLKAIFDGR+ VG LEIGKLLSPHFVKS
Subjt:  KQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS

XP_023000111.1 upstream activation factor subunit spp27-like [Cucurbita maxima]1.3e-4673.86Show/hide
Query:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATST----ESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAV
        MASGL+NGTRLFR C TLLDSLKS T A YSSAA+ S       PK +LKAS A +T    E+G KKE NRS GIFK VQVSPAL  FLGMSE+SRSEAV
Subjt:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATST----ESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAV

Query:  KQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS
        KQIWSYIKLN+LQNP +KR I+CDEKLKAIFDGR+ VG LEIGKLLSPHFVKS
Subjt:  KQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS

XP_023514456.1 upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo]1.7e-4673.86Show/hide
Query:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAAT----STESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAV
        MASGL+NGTRLFR C TLLDSLKS T A YSSAA+ S       PK KLKAS A     ++E+G KKEVNRS GIFK VQVSPAL  FLGMSE+SR EAV
Subjt:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAAT----STESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAV

Query:  KQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS
        KQIWSYIKLNNLQNP +KR I+CDEKLKAIFDGR+ VG LEIGKLLS HFVKS
Subjt:  KQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS

TrEMBL top hitse value%identityAlignment
A0A1S3CBA0 protein TRI1-like2.3e-3661.74Show/hide
Query:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIW
        MASGLSNGTR FR C TLLDSLK  T A YSS  + S KS    P A   A +   +++  K++ N S GI K ++VSP L  FLG SE SR++A+KQIW
Subjt:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIW

Query:  SYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS
        SYIKLNNLQN  DKR I+CD KLKAIF GR+KVG LEI K LSPHFVKS
Subjt:  SYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS

A0A5D3DMJ2 Protein TRI1-like2.3e-3661.74Show/hide
Query:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIW
        MASGLSNGTR FR C TLLDSLK  T A YSS  + S KS    P A   A +   +++  K++ N S GI K ++VSP L  FLG SE SR++A+KQIW
Subjt:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIW

Query:  SYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS
        SYIKLNNLQN  DKR I+CD KLKAIF GR+KVG LEI K LSPHFVKS
Subjt:  SYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS

A0A6J1DQ38 uncharacterized protein LOC1110227771.4e-46100Show/hide
Query:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIW
        MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIW
Subjt:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIW

Query:  SYIKLNNLQ
        SYIKLNNLQ
Subjt:  SYIKLNNLQ

A0A6J1KEZ2 upstream activation factor subunit spp27-like6.3e-4773.86Show/hide
Query:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATST----ESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAV
        MASGL+NGTRLFR C TLLDSLKS T A YSSAA+ S       PK +LKAS A +T    E+G KKE NRS GIFK VQVSPAL  FLGMSE+SRSEAV
Subjt:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATST----ESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAV

Query:  KQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS
        KQIWSYIKLN+LQNP +KR I+CDEKLKAIFDGR+ VG LEIGKLLSPHFVKS
Subjt:  KQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS

A0A6J1KHF5 upstream activation factor subunit spp27-like1.8e-4673.2Show/hide
Query:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATS----TESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAV
        MASGL+NGTRLFR C TLLDSLKS T A YSSAA+ S       PK +LKAS A +    +E+G KKE NRS GIFK VQVSPAL  FLGMSE+SRSEAV
Subjt:  MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATS----TESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAV

Query:  KQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS
        KQIWSYIKLN+LQNP +KR I+CDEKLKAIFDGR+ VG LEIGKLLSPHFVKS
Subjt:  KQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp271.2e-1035.78Show/hide
Query:  KSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNR---SSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHC
        K A         +T + +   K  AK         E G K++ N+   ++ + KP+++SP L  FLG+ + SR + VK++W YIK ++LQ+P DKR I C
Subjt:  KSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNR---SSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHC

Query:  DEKLKAIFD
        D+KLK++F+
Subjt:  DEKLKAIFD

Q05024 Protein TRI11.1e-0837.84Show/hide
Query:  STSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVG
        ST  +   S+ K+K K     S +S        +S   + V +S  L  FLG  E  R++ VK IW YIK ++LQNP D+R I CDEK++ IF    K+ 
Subjt:  STSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVG

Query:  FLEIGKLLSPH
           + KLL+ H
Subjt:  FLEIGKLLSPH

Q08747 Upstream activation factor subunit UAF302.7e-1039.08Show/hide
Query:  KKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVK
        K  V++S    + V +S +L S LG  E +R+E V+++W+YIK +NLQNP +K+ I CDEKL+ I          E+ K+L+ H  +
Subjt:  KKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVK

Q9FMT4 SWI/SNF complex component SNF12 homolog4.9e-0428.97Show/hide
Query:  KSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEI
        +S A +   ++K        +  + E+N     FK   +S AL   LG+   +R   +  IW Y+K   LQNP D    +CD  L+ +F G +K+ F  +
Subjt:  KSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEI

Query:  GKLLSPH
         + +S H
Subjt:  GKLLSPH

Q9P7S3 SWI/SNF and RSC complexes subunit ssr33.1e-0635.29Show/hide
Query:  QVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLS
        ++S A  + LG+ E +R + V  +W YIK + LQ+  +KR+I+CD+ L+ +F+  D++ F  I +L++
Subjt:  QVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLS

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein3.3e-2462.5Show/hide
Query:  GIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS
        GIFK   VS  L SF G  E +R  A+K++W Y+KL+NLQNP +K+ IHCD+KLK IFDG+DKVG  EI KLLSPHF KS
Subjt:  GIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS

AT2G14880.1 SWIB/MDM2 domain superfamily protein1.1e-1943.38Show/hide
Query:  GTLLDSLKSATGASYSSAASTSHKSAASKPKAKLK--ASAATSTESGAKKEVNR--SSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNP
        GT    L   T +  + +   S    AS P AKL+   +  ++TES      N+    GI KP  VSP +   + + E +R++A+K+IW+YIK ++LQ+P
Subjt:  GTLLDSLKSATGASYSSAASTSHKSAASKPKAKLK--ASAATSTESGAKKEVNR--SSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNP

Query:  GDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFV
         +KR I CDEKLK IF+GRD+VGFLEI KL+ PHF+
Subjt:  GDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFV

AT2G35605.1 SWIB/MDM2 domain superfamily protein1.1e-2461.39Show/hide
Query:  LKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVK
        L A AA+ST  GAK    + +GI K V VS  L +F+G +E SR+ AVK+IW YIKLNNLQNP +KR I CDE+LK IF G+D VGFLEI KLLS HF K
Subjt:  LKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVK

Query:  S
        S
Subjt:  S

AT3G03590.1 SWIB/MDM2 domain superfamily protein2.8e-3157.55Show/hide
Query:  LFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQN
        +FR   +LL     AT +S  SA ST  K  A+KPKAK K      ++S AKK   RS+GIFK   VSP L  FLG  ETSR++A+K IW+YIK ++LQN
Subjt:  LFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQN

Query:  PGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS
        P DKR I CDE LK IF+G+DKVGFLEI KLLSPHFVK+
Subjt:  PGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS

AT4G34290.1 SWIB/MDM2 domain superfamily protein1.2e-1842.86Show/hide
Query:  LKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHCDE
        L+S+  +  S   S +H +     +A   A+AA+S  +   K      GI KP  VS A+   +G+ E  R++A+K+IW+YIK ++LQ+P +KR I CDE
Subjt:  LKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQNPGDKRVIHCDE

Query:  KLKAIFDGRDKVGFLEIGKLLSPHFV
        KLK IF+G+++VGFLEI KL+ PHF+
Subjt:  KLKAIFDGRDKVGFLEIGKLLSPHFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGGGTCTTAGCAATGGCACCAGGTTATTCAGAGCTTGCGGAACCCTATTGGATTCGCTCAAATCCGCCACCGGAGCTTCCTATTCTTCCGCCGCTTCGACCTC
TCACAAGTCGGCGGCCTCGAAGCCGAAGGCGAAGCTGAAAGCTTCCGCCGCTACTTCCACAGAATCCGGAGCAAAGAAAGAGGTCAATCGTTCGTCGGGGATCTTCAAGC
CGGTCCAAGTGTCTCCGGCTCTCGGTAGCTTCCTCGGTATGTCCGAGACTTCGCGTTCTGAAGCTGTCAAGCAAATATGGTCCTACATCAAGCTGAATAATCTCCAGAAC
CCTGGTGATAAGAGAGTGATCCATTGTGATGAGAAGCTGAAGGCAATATTTGATGGCAGAGATAAAGTGGGGTTCTTAGAGATTGGAAAATTGCTATCCCCTCATTTTGT
GAAGTCT
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGGGTCTTAGCAATGGCACCAGGTTATTCAGAGCTTGCGGAACCCTATTGGATTCGCTCAAATCCGCCACCGGAGCTTCCTATTCTTCCGCCGCTTCGACCTC
TCACAAGTCGGCGGCCTCGAAGCCGAAGGCGAAGCTGAAAGCTTCCGCCGCTACTTCCACAGAATCCGGAGCAAAGAAAGAGGTCAATCGTTCGTCGGGGATCTTCAAGC
CGGTCCAAGTGTCTCCGGCTCTCGGTAGCTTCCTCGGTATGTCCGAGACTTCGCGTTCTGAAGCTGTCAAGCAAATATGGTCCTACATCAAGCTGAATAATCTCCAGAAC
CCTGGTGATAAGAGAGTGATCCATTGTGATGAGAAGCTGAAGGCAATATTTGATGGCAGAGATAAAGTGGGGTTCTTAGAGATTGGAAAATTGCTATCCCCTCATTTTGT
GAAGTCT
Protein sequenceShow/hide protein sequence
MASGLSNGTRLFRACGTLLDSLKSATGASYSSAASTSHKSAASKPKAKLKASAATSTESGAKKEVNRSSGIFKPVQVSPALGSFLGMSETSRSEAVKQIWSYIKLNNLQN
PGDKRVIHCDEKLKAIFDGRDKVGFLEIGKLLSPHFVKS