| GenBank top hits | e value | %identity | Alignment |
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| XP_004154029.1 RNA polymerase sigma factor sigB [Cucumis sativus] | 3.7e-278 | 88.93 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
MSCLLPQFKCHPETFSIQFK T ANYSHHH+FLPTA SS TKVRDPHSLRTQCILSAASP TSTGTATT +V+RLKLPP D NTDSVS ERLRS
Subjt: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
Query: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
YL AVESS ASTLLTSEEA+IAAAAAEAVTLAKAAVKVA+DAALL NN NSS+ G KSQSS K DALHFKW QFMESERADIIG PVGVN RP EGDAL+
Subjt: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
Query: HDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
T ESD +PT+EELELLQDELS +I V+S+RQTER+A+RTRAAEK TSV+S KSGSSSRKKRNSVQEVDYSDPLRYLRATT+ SRLLTATEELELSE
Subjt: HDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
Query: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
FSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Query: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
EAET ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Subjt: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| XP_008460092.1 PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo] | 1.8e-277 | 88.76 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
MSCLLPQFKCHPETFSIQFK T AN SHHH+F+PTA SS TKVRDPHSLRTQCILSAASP TSTGTATT NV+RLKLPP D NTDSVS ERLRS
Subjt: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
Query: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
YL AVESS ASTLLTSEEATIAAAAAEAVTLAKAAVKVA+DAALL NN NSS+ G KSQ S K DALHFKW QFMESERADIIG PVGVN RP EGDAL+
Subjt: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
Query: HDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
T ESD +PT++ELELLQDELS +I V+S+RQTER+A+RTRAAEK TSVV KSGSSSRKKR+S+QEVDYSDPLRYLRATTS SRLLTATEELELSE
Subjt: HDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
Query: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
FSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Query: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
EAET+ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| XP_022155781.1 RNA polymerase sigma factor sigB [Momordica charantia] | 0.0e+00 | 99.83 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDS+SAERLRS
Subjt: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
Query: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
Subjt: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
Query: HDTAESDYTDPTTEELELLQDELSNIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEG
HDTAESDYTDPTTEELELLQDELSNIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEG
Subjt: HDTAESDYTDPTTEELELLQDELSNIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEG
Query: IQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF
IQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF
Subjt: IQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF
Query: STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPE
STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPE
Subjt: STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPE
Query: AETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
AETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: AETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| XP_022964550.1 RNA polymerase sigma factor sigB [Cucurbita moschata] | 2.5e-274 | 87.54 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
MSCLLPQFKCHPETFSIQFKT A T+T T SHHH FLPTANS+ K RDPHSLRTQCILSAASP T TGTATTFNV+RLKLPP D NTDSVSAERLRS
Subjt: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
Query: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
YL AVESS ASTLLTSEEATIAAAAAEAV LAKAAVK A DAALLVNNSNSS++ KSQSSS+S+ALHFKWDQFMESERADIIG PVGVNNRP EGDAL+
Subjt: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
Query: HDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
TAESD +PT+EELELL+DE S +IAVRS RQTER+A+RTRA+EK ATSVVS+KSGSSSRKKRNS QEVDY+DPLRYLRATTS S+LLTA++ELELSE
Subjt: HDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
Query: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERL+EEL RYG EPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P+DEEIA AAGLSMKRLA VLMTPKAPRSLEQK GINQNLKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Query: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
EA T+EDLLIKQFMKQ+LEKVLDSLNPRERQ+IRWR+GMEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Subjt: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
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| XP_038875580.1 RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida] | 1.8e-280 | 89.63 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYS-HHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLR
MSCLLPQFKCHPETFSIQFK T ANY+ HHH FLPTANSS TKVRDPHSLRTQCILSAASP TSTGTATT NV+RL LPP D NTDSVS ERLR
Subjt: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYS-HHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLR
Query: SYLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDAL
SYL AVESS ASTLLTSEEATIAAAAAEAV LAKAAVKVA+DAALL NNSNSS+ G+KS+SS + DALHFKW QFMESERADIIG PVGVNNRP E DAL
Subjt: SYLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDAL
Query: QHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELS
Q T +SD +PT+EELELLQDELS +I VRS+RQTER+A+RTRAAEK ATSVVS+KSGSSSRKKRNS+QEVDYSDPLRYLRATTS SRLLTA EELELS
Subjt: QHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELS
Query: EGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF
EGIQDLLKLERLQEEL +RYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF
Subjt: EGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF
Query: KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISD
KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISD
Subjt: KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISD
Query: PEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
PEAET+ED+LIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL+S
Subjt: PEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A0A0K917 RNA polymerase sigma factor | 1.8e-278 | 88.93 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
MSCLLPQFKCHPETFSIQFK T ANYSHHH+FLPTA SS TKVRDPHSLRTQCILSAASP TSTGTATT +V+RLKLPP D NTDSVS ERLRS
Subjt: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
Query: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
YL AVESS ASTLLTSEEA+IAAAAAEAVTLAKAAVKVA+DAALL NN NSS+ G KSQSS K DALHFKW QFMESERADIIG PVGVN RP EGDAL+
Subjt: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
Query: HDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
T ESD +PT+EELELLQDELS +I V+S+RQTER+A+RTRAAEK TSV+S KSGSSSRKKRNSVQEVDYSDPLRYLRATT+ SRLLTATEELELSE
Subjt: HDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
Query: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
FSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Query: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
EAET ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Subjt: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A1S3CD00 RNA polymerase sigma factor | 8.8e-278 | 88.76 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
MSCLLPQFKCHPETFSIQFK T AN SHHH+F+PTA SS TKVRDPHSLRTQCILSAASP TSTGTATT NV+RLKLPP D NTDSVS ERLRS
Subjt: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
Query: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
YL AVESS ASTLLTSEEATIAAAAAEAVTLAKAAVKVA+DAALL NN NSS+ G KSQ S K DALHFKW QFMESERADIIG PVGVN RP EGDAL+
Subjt: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
Query: HDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
T ESD +PT++ELELLQDELS +I V+S+RQTER+A+RTRAAEK TSVV KSGSSSRKKR+S+QEVDYSDPLRYLRATTS SRLLTATEELELSE
Subjt: HDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
Query: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
FSTYAHWWIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Query: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
EAET+ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A6J1DSR7 RNA polymerase sigma factor | 0.0e+00 | 99.83 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDS+SAERLRS
Subjt: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
Query: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
Subjt: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
Query: HDTAESDYTDPTTEELELLQDELSNIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEG
HDTAESDYTDPTTEELELLQDELSNIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEG
Subjt: HDTAESDYTDPTTEELELLQDELSNIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEG
Query: IQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF
IQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF
Subjt: IQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKF
Query: STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPE
STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPE
Subjt: STYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPE
Query: AETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
AETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt: AETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| A0A6J1HL45 RNA polymerase sigma factor sigB | 1.2e-274 | 87.54 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
MSCLLPQFKCHPETFSIQFKT A T+T T SHHH FLPTANS+ K RDPHSLRTQCILSAASP T TGTATTFNV+RLKLPP D NTDSVSAERLRS
Subjt: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
Query: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
YL AVESS ASTLLTSEEATIAAAAAEAV LAKAAVK A DAALLVNNSNSS++ KSQSSS+S+ALHFKWDQFMESERADIIG PVGVNNRP EGDAL+
Subjt: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
Query: HDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
TAESD +PT+EELELL+DE S +IAVRS RQTER+A+RTRA+EK ATSVVS+KSGSSSRKKRNS QEVDY+DPLRYLRATTS S+LLTA++ELELSE
Subjt: HDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
Query: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERL+EEL RYG EPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P+DEEIA AAGLSMKRLA VLMTPKAPRSLEQK GINQNLKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Query: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
EA T+EDLLIKQFMKQ+LEKVLDSLNPRERQ+IRWR+GMEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Subjt: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
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| A0A6J1KM29 RNA polymerase sigma factor | 2.7e-274 | 87.88 | Show/hide |
Query: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
MSCLLPQFKCHPETFSIQFKT AIT+T T SHHH FLPTANS+ KVRDPHSLRTQCILSAA TSTGTATTFNV+RLKLPP D NTDSVSAERLRS
Subjt: MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLRS
Query: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
YL AVESS ASTLLTSEEATIAAAAAEAV LAKAAVK A DAALLVNNSNS+++ KSQSSSKS+ALHFKWDQFMESERADIIG PVGVNNRP EGDAL+
Subjt: YLSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQ
Query: HDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
TAESD +PT+EELELLQDE S +IAVRS RQTER+A+RTRA+EK ATSVVS+KSGSSSRKKRNS QEVDY+DPLRYLRATTS S+LLTA++ELELSE
Subjt: HDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
Query: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
GIQDLLKLERL+EEL RYG EPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQG GMNLQDLVQEGCRGLVRGAEKFDASKGFK
Subjt: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATY+VKEARKQLY+ NGR P DEEIA AAGLSMKRLA VLMTPKAPRSLEQK GINQNLKPSEVISDP
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Query: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
EA T+EDLLIKQFMKQ+LEKVLDSLNPRERQ+IRWR+GMEDGRMKTLQEIGE+MGVSRERIRQIE CAFRKLKNKKRTKHLQQYLM
Subjt: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 4.9e-185 | 62.83 | Show/hide |
Query: SCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSL--RTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLR
SCLLPQFKC P++FSI F+T S C + S+ + QC +S SP+ T + +V +L+LP D ++DS+ ++R
Subjt: SCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSL--RTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLR
Query: SY---------LSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIG-VPVGV
+Y +E+ + TLLTS+EA + AAAAEAV LA+AAVKVAKDA L N++N++ +SS +D KWDQF E ERA I+G + V
Subjt: SY---------LSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIG-VPVGV
Query: NNRPAEGDALQHDTAES--DYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNS
N ++ ES D EE+ELL+++ S ++AVRS RQTER+A+R + EK A+ + SVK+GSS +KKR QEVD++DPLRYLR TTS+S
Subjt: NNRPAEGDALQHDTAES--DYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNS
Query: RLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV
+LLT EE ELS GIQDLLKLERLQ EL ER G++PTFAQWA+AAGV+Q++LR+R+++GT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV
Subjt: RLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV
Query: RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
RGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL AVL++PK PRSL+QKIG+
Subjt: RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Query: NQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
NQNLKPSEVI+DPEA TSED+LIK+FM+QDL+KVLDSL RE+QVIRWRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR HLQQYL++
Subjt: NQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| P26683 RNA polymerase sigma factor SigA | 7.6e-77 | 46.39 | Show/hide |
Query: KSGSSSRKKRNSVQEVDY--SDPLRYLRATTSNSRLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKM
KSG +++ +R + + + D +R RLL A EE+EL+ I DLL+LER++E L E+ ++P ++WA A + R RL+ G KDKM
Subjt: KSGSSSRKKRNSVQEVDY--SDPLRYLRATTSNSRLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKM
Query: IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPD
++SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P
Subjt: IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPD
Query: DEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEI
+EEIA +++++L + + + P SLE IG ++ + + I + + ET ED + K +++DLEKVLDSL+PRER V+R R+G++DGRMKTL+EIG+I
Subjt: DEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEI
Query: MGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
V+RERIRQIE+ A RKL++ R L++Y+
Subjt: MGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| P38023 RNA polymerase sigma factor SigA1 | 6.0e-74 | 42.08 | Show/hide |
Query: TEELELLQDELSNIAVRSRRQTERRAKRTRAAEKIATSVVSV-------------KSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
T+ ELL L +++R + R K T A + AT++ + ++ K + V++ D +R RLL A EE+EL+
Subjt: TEELELLQDELSNIAVRSRRQTERRAKRTRAAEKIATSVVSV-------------KSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE
Query: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
I DLL LER+++EL E+ + P+ A+WAAA R+RL G KDKM++SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+K
Subjt: GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Query: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
FSTYA WWI+QA+ ++++DQSRTIRLP H+ E R+K+ K L E GR P +EEIA +++++L + + + P SLE IG ++ + + I +
Subjt: FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Query: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
+ ET ED + K +++DLE VL +L+PRER V+R R+G++DGRMKTL+EIG++ V+RERIRQIE+ A RKL++ R L++Y+
Subjt: EAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| P52322 RNA polymerase sigma factor SigA | 6.5e-68 | 40.71 | Show/hide |
Query: SSRKKRNSVQEVDYS-DPLRYLRATTSNSRLLTATEELELSEGIQDLLKLERLQEE----------------------LRERYGKEPTFA----------
+S ++R++ ++ Y+ D +R RLL A EE+EL+ I DLLKLER++E+ + E+ KEP +
Subjt: SSRKKRNSVQEVDYS-DPLRYLRATTSNSRLLTATEELELSEGIQDLLKLERLQEE----------------------LRERYGKEPTFA----------
Query: -------QWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD
+W A + ++RL +G K+KM++SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++D
Subjt: -------QWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSD
Query: QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLE
QSRTIRLP H+ E R+K+ K L E R P +EEIA +++++L + + + P SLE IG ++ + + I + + ET ED + K +++DLE
Subjt: QSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLE
Query: KVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
VLD+L+PRER V+R R+G++DGRMKTL+EIG+I V+RERIRQIE+ A RKL++ R L++Y+
Subjt: KVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| P74565 RNA polymerase sigma factor SigA | 1.0e-65 | 39.51 | Show/hide |
Query: KRNSVQEVDYS-DPLRYLRATTSNSRLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFA------------------------------------
++++V++ Y+ D +R RLL A EE+EL+ I DLL+LE +++ L + ++P+
Subjt: KRNSVQEVDYS-DPLRYLRATTSNSRLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFA------------------------------------
Query: --------QWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
+W+ N R+RL KDKM++SN+RLV+SIAK Y G++ QDL+QEG GL+R AEKFD KG+KFSTYA WWI+QA+ ++++
Subjt: --------QWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLS
Query: DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDL
DQSRTIRLP H+ E R+K+ K L E R P +EEIAE +++++L + + + P SLE IG ++ + + I + + ET ED + K +++DL
Subjt: DQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDL
Query: EKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
E VLD+L+PRER V+R R+G++DGRMKTL+EIG+I V+RERIRQIE+ A RKL++ R L++Y+
Subjt: EKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 3.5e-186 | 62.83 | Show/hide |
Query: SCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSL--RTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLR
SCLLPQFKC P++FSI F+T S C + S+ + QC +S SP+ T + +V +L+LP D ++DS+ ++R
Subjt: SCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSL--RTQCILSAASPSTSTGTATTFNVERLKLPPLDANTDSVSAERLR
Query: SY---------LSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIG-VPVGV
+Y +E+ + TLLTS+EA + AAAAEAV LA+AAVKVAKDA L N++N++ +SS +D KWDQF E ERA I+G + V
Subjt: SY---------LSAVESSFASTLLTSEEATIAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERADIIG-VPVGV
Query: NNRPAEGDALQHDTAES--DYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNS
N ++ ES D EE+ELL+++ S ++AVRS RQTER+A+R + EK A+ + SVK+GSS +KKR QEVD++DPLRYLR TTS+S
Subjt: NNRPAEGDALQHDTAES--DYTDPTTEELELLQDELS-NIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNS
Query: RLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV
+LLT EE ELS GIQDLLKLERLQ EL ER G++PTFAQWA+AAGV+Q++LR+R+++GT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV
Subjt: RLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLV
Query: RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
RGAEKFDA+KGFKFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL AVL++PK PRSL+QKIG+
Subjt: RGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Query: NQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
NQNLKPSEVI+DPEA TSED+LIK+FM+QDL+KVLDSL RE+QVIRWRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR HLQQYL++
Subjt: NQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
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| AT1G64860.1 sigma factor A | 7.2e-38 | 29.55 | Show/hide |
Query: SSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQHDTAESDYTDP-----TTEELELLQDELS----NIAVRSRRQTERRAKRT
S+K+G ++ +S ++ +S +A V V +P + + E Y D + E + LLQ + N++ +E K T
Subjt: SSKTGKKSQSSSKSDALHFKWDQFMESERADIIGVPVGVNNRPAEGDALQHDTAESDYTDP-----TTEELELLQDELS----NIAVRSRRQTERRAKRT
Query: RAAEKIATSVVSVKSGSSSRKKR------------NSVQEVDYSDPLR-YLRATTSNSRLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWA
+KI V SG S+R++R +V +V +R Y++ S +L+ E + LS+ I+ L+L+ + L++R G EP+ Q A
Subjt: RAAEKIATSVVSVKSGSSSRKKR------------NSVQEVDYSDPLR-YLRATTSNSRLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWA
Query: AAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH
+ +++ L+ L ++K+ SN+RLV+SIA+ Y G + DLVQ G GL+RG EKFD+SKGF+ STY +WWI+Q V ++L D SRT+RLP H
Subjt: AAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFH
Query: MVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEV----ISDPEAETS-----EDLLIKQFMKQDLEK
+ E ++ A+ +L E G P + IAE+ +S K++ SL++ + N P E I+D E + +DL +K+++ K
Subjt: MVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEV----ISDPEAETS-----EDLLIKQFMKQDLEK
Query: VLD-SLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
++ +L RE+++IR +G+ D T ++I + +G+SRER+RQ+ A KLK+ R + ++ ++
Subjt: VLD-SLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
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| AT2G36990.1 RNApolymerase sigma-subunit F | 4.0e-65 | 36.98 | Show/hide |
Query: ESERADIIGVPVGVNNRPAEGDALQHDT---AESDYTDPTTEELELLQDELSNIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDY
++E D++ + + + L DT + D + + E NI VRS+RQ ERRAK RA + +S KK+ Q D
Subjt: ESERADIIGVPVGVNNRPAEGDALQHDT---AESDYTDPTTEELELLQDELSNIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDY
Query: SDPLRYLRATTSNSRLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGM
D L+ +LLTA EE EL IQ LLKLE+++ +L + G EPT +WA A G++ L+ ++ G ++K+I +N+RLV+ IAK YQ G+
Subjt: SDPLRYLRATTSNSRLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGM
Query: NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLM
N QDL+QEG GL++ EKF G +F+TYA+WWI+Q++RKS+ SRTIRLP ++ +V EARK E P EE+A G+S ++L +L
Subjt: NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLM
Query: TPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLK
+ P S++Q I +Q+ E+ D ET + KQ M+ + +L+ L+P+ER++I+ RFG++ G+ ++L EIGEI G+S+ER+RQ+ES A +LK
Subjt: TPKAPRSLEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLK
Query: NKKRTKHLQQY
+ L Y
Subjt: NKKRTKHLQQY
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| AT3G53920.1 RNApolymerase sigma-subunit C | 3.2e-54 | 33.16 | Show/hide |
Query: TTEELELLQDELSNIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSS------RKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEGIQDLL
TTE ++ ++ + V SRR+ +++A+R S V+ ++G S R N++ P +Y + SR E E+S G++ +
Subjt: TTEELELLQDELSNIAVRSRRQTERRAKRTRAAEKIATSVVSVKSGSSS------RKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSEGIQDLL
Query: KLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH
+ER++ +L E GK + + WAAAAG+N++ L + L+YG +C+D+++KS LV+ +A+NY+G G+ +DL+Q G G+++GAE+FD ++G+KFSTY
Subjt: KLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH
Query: WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-RHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETS
+WI++++ +S +R + +P ++ +++ARK L + +G ++ DEEIA+ G S+K++ A K S+++K+G K E D E+
Subjt: WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-RHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETS
Query: EDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
E+ +++Q ++D+ +L+ L PRE+QV+ R+G++D R K+L+EIG+++ VS+E IR+IE A KL+++ + L+ YL
Subjt: EDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
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| AT5G13730.1 sigma factor 4 | 7.1e-46 | 35.64 | Show/hide |
Query: SNSRLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCR
S S L+ EE++L +++ KLE L + E E A+ G +R+ + L ++K+ + RLV+SIA YQG G+NLQDL+QEG
Subjt: SNSRLLTATEELELSEGIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCR
Query: GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQK
GL+RGAE+FD +G+K STY +WWIKQA+ ++++ +SR ++LP M E T +V EA L + R P EEIAE L++ + + ++P SL++
Subjt: GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQK
Query: IGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
N + E++ P+ E+++ ++ MK ++E++L SL RE +V+ FG+ + +EIG+ + +SRER+RQI A +KL+N L+ Y
Subjt: IGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
Query: LMS
S
Subjt: LMS
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