; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS007910 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007910
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S13
Genome locationscaffold13:2310589..2311628
RNA-Seq ExpressionMS007910
SyntenyMS007910
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR012606 - Ribosomal protein S13/S15, N-terminal
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039994.1 40S ribosomal protein S13 [Cucumis melo var. makuwa]2.9e-6699.24Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

PPD87080.1 hypothetical protein GOBAR_DD15985 [Gossypium barbadense]3.8e-6698.5Show/hide
Query:  SKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRK
        SKGISASALPYKRTPPSWLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRK
Subjt:  SKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRK

Query:  DKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        DKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  DKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_004153746.1 40S ribosomal protein S13 [Cucumis sativus]2.9e-6699.24Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]1.3e-66100Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_038906798.1 40S ribosomal protein S13 [Benincasa hispida]2.9e-6699.24Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKIS+QDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

TrEMBL top hitse value%identityAlignment
A0A0A0KEP4 Ribosomal_S13_N domain-containing protein1.4e-6699.24Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A5A7T967 40S ribosomal protein S131.4e-6699.24Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A6J1CQC4 40S ribosomal protein S13-like6.4e-67100Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A6J1HJL3 40S ribosomal protein S13-like6.4e-67100Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A6J1KV63 40S ribosomal protein S13-like6.4e-67100Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S132.0e-6595.45Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGIS+SALPY+RT PSWLKISSQDV E ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P59223 40S ribosomal protein S13-12.2e-6493.18Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKR+ PSWLK + QDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P59224 40S ribosomal protein S13-25.8e-6593.94Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKR+ PSWLK +SQDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P62302 40S ribosomal protein S135.6e-6897.73Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGIS+SALPYKRTPPSWLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Q69UI1 40S ribosomal protein S13-24.0e-5885.61Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGIS+SALPYKRTPPSWLK ++ DV E I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYK+TKKLPP WK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S151.6e-6593.18Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKR+ PSWLK + QDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK

AT4G00100.1 ribosomal protein S13A4.1e-6693.94Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKR+ PSWLK +SQDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGTAAGGGTATTTCAGCTTCGGCACTGCCGTACAAGAGGACGCCGCCGAGTTGGCTGAAGATCTCCTCTCAGGATGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGG
TTTGACACCATCTCAAATTGGTGTTATTCTTCGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTAACTGGGAGCAAGATTTTGCGAATATTGAAGGCTCATGGGCTAG
CTCCTGAAATTCCGGAGGATCTTTACCATCTCATCAAGAAAGCTGTTTCAATCAGAAAGCATTTGGAGAGGAACAGAAAGGACAAAGATTCCAAGTTCAGGTTGATTCTG
GTGGAGAGTAGGATCCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAG
mRNA sequenceShow/hide mRNA sequence
AGTAAGGGTATTTCAGCTTCGGCACTGCCGTACAAGAGGACGCCGCCGAGTTGGCTGAAGATCTCCTCTCAGGATGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGG
TTTGACACCATCTCAAATTGGTGTTATTCTTCGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTAACTGGGAGCAAGATTTTGCGAATATTGAAGGCTCATGGGCTAG
CTCCTGAAATTCCGGAGGATCTTTACCATCTCATCAAGAAAGCTGTTTCAATCAGAAAGCATTTGGAGAGGAACAGAAAGGACAAAGATTCCAAGTTCAGGTTGATTCTG
GTGGAGAGTAGGATCCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAG
Protein sequenceShow/hide protein sequence
SKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLIL
VESRIHRLARYYKKTKKLPPVWK