; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS007928 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007928
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein PXR1
Genome locationscaffold13:2490147..2499130
RNA-Seq ExpressionMS007928
SyntenyMS007928
Gene Ontology termsGO:0016874 - ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574789.1 hypothetical protein SDJN03_25428, partial [Cucurbita argyrosperma subsp. sororia]1.6e-9180Show/hide
Query:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL
        MGGKG RRRERNYRAAHG YDRLPPPP++S++D LPSKLRKLM+FTS R QESEKV +D Q KRK+EAV +EKK HP++A G++D+K+EGNGGNS+MPQL
Subjt:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL

Query:  TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVAS
        T S DD+QSKSSEKK+KKRK+KQV DLRFE+L+  SNRRLKKRER++K+ EAKKNKHKK KT+EDLDFPRHEKIKFGDVVEAPLKL AVPKAFKSAQVAS
Subjt:  TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVAS

Query:  QERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV
        QERKRLQAI EYRNRK WTSRPG+QIPSM ISPAV
Subjt:  QERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV

XP_022153750.1 DNA ligase 1 [Momordica charantia]2.9e-117100Show/hide
Query:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL
        MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL
Subjt:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL

Query:  TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVAS
        TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVAS
Subjt:  TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVAS

Query:  QERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV
        QERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV
Subjt:  QERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV

XP_022959194.1 uncharacterized protein LOC111460256 [Cucurbita moschata]1.0e-9079.57Show/hide
Query:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL
        MGGKG RRRERNYRAAHG YDRLPPPP++S++D LPSKLRKLM+FTS R QESEKV +D Q KRK+EAV +EKK HP++A G++D+K++GNGGNS+MPQL
Subjt:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL

Query:  TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVAS
        T S DD+QSK SEKK+KKRK+KQV DLRFE+L+  SNRRLKKRER+KK+ EAKKNKHKK KT+EDLDFPRHEKIKFGDVVEAPLKL AVPKAFKSAQVAS
Subjt:  TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVAS

Query:  QERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV
        QERKRLQAI EYRNRK WTSRPG+QIPSM ISPAV
Subjt:  QERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV

XP_023547832.1 protein PXR1 [Cucurbita pepo subsp. pepo]4.0e-9079.15Show/hide
Query:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL
        MGGKG RRRERNYRAAHG YDRLPPPP++S++D LPSKLRKLM+FTS R QESEKV +D Q KRK+EAV +EKK HP++A G++D+K++G+GGNS++PQL
Subjt:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL

Query:  TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVAS
        T S DD+QSKSSEKK KKRK+KQV DLRFE+L+  SNRRLKKRER+KK+ EAKKNKHKK KT+EDLDFPRHEKIKFGDVVEAPLKL AVPKAFKSAQVAS
Subjt:  TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVAS

Query:  QERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV
        QERKRLQAI EYRNRK WTSRPG+QIPSM ISPAV
Subjt:  QERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV

XP_038907272.1 protein PXR1 [Benincasa hispida]9.7e-8980.93Show/hide
Query:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL
        MGGKG RRRERNYRAAHG YDRLPPPP++S++D LPSKLRKLMSFTSS  QESEKV  D Q KRK++AV++EKKSH +DA GR+DVK++GNG  S+ PQL
Subjt:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL

Query:  TDS-GDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVA
        T S GDD+QSKSSEKK+KK+KRKQV DLRFE+ + ES+RRLKKRERRKK+QEAKKNKHKK +TEEDLDFPRHEKIKFGDVVEAPLKL+AVPKAFKSAQVA
Subjt:  TDS-GDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVA

Query:  SQERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV
        SQERKR QAINEYRNRK WTSRPGIQIPSM ISPAV
Subjt:  SQERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV

TrEMBL top hitse value%identityAlignment
A0A1S4E2Q2 LOW QUALITY PROTEIN: protein PXR12.0e-8780.43Show/hide
Query:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL
        MGGKG RRRERNYRAAHG YDRLPPPPD+S+ D LPSKLRKLMSFTSSR QESE V +D Q KRK++A ++EKKS+ +DA GR+DVK++ NGGNS+MPQ 
Subjt:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL

Query:  TDSG-DDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVA
        T S  DD+QSKSSEKK+KKRKRKQV DLRFE+   ES+RRLKKRERRKK+QEAKKNKHKK KTEE LDFPRHE IKFGDVVEAPLKL+AVPKAFKSAQVA
Subjt:  TDSG-DDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVA

Query:  SQERKRLQAINEYRNRKAWTSRPGIQIPSMGISPA
        SQERKRLQAINEYRNRK WTSRPGIQIPSM I+PA
Subjt:  SQERKRLQAINEYRNRKAWTSRPGIQIPSMGISPA

A0A5A7TEP7 Protein PXR11.1e-8881.28Show/hide
Query:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL
        MGGKG RRRERNYRAAHG YDRLPPPPD+S+ D LPSKLRKLMSFTSSR QESE V +D Q KRK++AV++EKKS+ +DA GR+DVK++ NGGNS+MPQ 
Subjt:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL

Query:  TDSG-DDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVA
        T S  DD+QSKSSEKK+KKRKRKQV DLRFE+   ES+RRLKKRERRKK+QEAKKNKHKK KTEE LDFPRHEKIKFGDVVEAPLKL+AVPKAFKSAQVA
Subjt:  TDSG-DDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVA

Query:  SQERKRLQAINEYRNRKAWTSRPGIQIPSMGISPA
        SQERKRLQAINEYRNRK WTSRPGIQIPSM I+PA
Subjt:  SQERKRLQAINEYRNRKAWTSRPGIQIPSMGISPA

A0A6J1DLN3 DNA ligase 11.4e-117100Show/hide
Query:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL
        MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL
Subjt:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL

Query:  TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVAS
        TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVAS
Subjt:  TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVAS

Query:  QERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV
        QERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV
Subjt:  QERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV

A0A6J1H3V7 uncharacterized protein LOC1114602565.0e-9179.57Show/hide
Query:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL
        MGGKG RRRERNYRAAHG YDRLPPPP++S++D LPSKLRKLM+FTS R QESEKV +D Q KRK+EAV +EKK HP++A G++D+K++GNGGNS+MPQL
Subjt:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL

Query:  TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVAS
        T S DD+QSK SEKK+KKRK+KQV DLRFE+L+  SNRRLKKRER+KK+ EAKKNKHKK KT+EDLDFPRHEKIKFGDVVEAPLKL AVPKAFKSAQVAS
Subjt:  TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVAS

Query:  QERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV
        QERKRLQAI EYRNRK WTSRPG+QIPSM ISPAV
Subjt:  QERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV

A0A6J1KUZ8 probable H/ACA ribonucleoprotein complex subunit 44.7e-8978.81Show/hide
Query:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAV-SSEKKSHPEDARGRTDVKNEGNGGNSEMPQ
        MGGKG RRRERNYRAAHG YDRLPPPP++S++D LPSKLRKLMSFTS R QESEKV +D Q KRK+EAV ++EKK HP++A G++D+K++GNGGNS+MPQ
Subjt:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAV-SSEKKSHPEDARGRTDVKNEGNGGNSEMPQ

Query:  LTDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVA
        LT S DD+QSKS+EKK+KKRK+KQV DLRFE+L+  SNRRLKKRER+KK+ EAKKNKHKK  ++EDLDFPRHEKIKFGDVVEAPLKL AVPKAFKSAQVA
Subjt:  LTDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVA

Query:  SQERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV
        SQERKRLQAI EYRNRK WTSRPG+QIPSM ISPAV
Subjt:  SQERKRLQAINEYRNRKAWTSRPGIQIPSMGISPAV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G45520.1 unknown protein2.3e-4349.78Show/hide
Query:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL
        MGGKG++RRE+NY AAHG   RLPPPPD SK D +PS LR LM++TS    +S K + + ++K KK  V                           +P  
Subjt:  MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQL

Query:  TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDL--DFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQV
           GDD      EKK KKRKR Q+ DLRFE    E + R K++ER+KK+ EAKK K  K KTE+ L  +FP+HE+I+FGDVV+APLKL  VPKA KS   
Subjt:  TDSGDDMQSKSSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDL--DFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQV

Query:  ASQERKRLQAINEYRNRKAWTSRPGIQIPSM
        ASQER RLQAI+ YR+RK WT+RPG+ IP++
Subjt:  ASQERKRLQAINEYRNRKAWTSRPGIQIPSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGCAAAGGACAGCGGCGGAGAGAGCGGAATTACAGAGCTGCACATGGAACCTACGATCGTCTCCCACCTCCGCCGGACTCTTCGAAACTCGATGCTCTACCTTC
CAAACTCCGCAAGCTAATGTCCTTCACTTCCTCTCGAGATCAAGAGTCTGAGAAGGTCTTGAAGGATACTCAGGACAAGCGCAAGAAAGAAGCCGTGAGTTCTGAAAAGA
AATCCCACCCGGAGGATGCTCGGGGAAGAACTGATGTAAAAAACGAAGGTAATGGTGGGAATTCAGAAATGCCTCAGCTTACAGATAGTGGTGATGACATGCAAAGCAAG
TCCAGTGAGAAGAAAGACAAAAAACGAAAGAGAAAGCAGGTTAATGACCTTCGTTTTGAGGAACTAGCGGGAGAATCAAATCGGCGTTTAAAGAAACGGGAACGTAGGAA
AAAATTTCAGGAGGCGAAAAAAAATAAACATAAAAAACCCAAGACAGAGGAGGATCTAGACTTCCCAAGACATGAAAAAATCAAATTTGGAGACGTGGTTGAAGCTCCAC
TGAAGTTGGTTGCAGTTCCGAAGGCATTTAAATCTGCACAAGTTGCTTCACAAGAGAGGAAGCGATTGCAGGCTATAAATGAATATAGAAACCGCAAGGCATGGACCTCA
AGGCCAGGGATACAAATACCTTCAATGGGGATATCGCCCGCTGTC
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGCAAAGGACAGCGGCGGAGAGAGCGGAATTACAGAGCTGCACATGGAACCTACGATCGTCTCCCACCTCCGCCGGACTCTTCGAAACTCGATGCTCTACCTTC
CAAACTCCGCAAGCTAATGTCCTTCACTTCCTCTCGAGATCAAGAGTCTGAGAAGGTCTTGAAGGATACTCAGGACAAGCGCAAGAAAGAAGCCGTGAGTTCTGAAAAGA
AATCCCACCCGGAGGATGCTCGGGGAAGAACTGATGTAAAAAACGAAGGTAATGGTGGGAATTCAGAAATGCCTCAGCTTACAGATAGTGGTGATGACATGCAAAGCAAG
TCCAGTGAGAAGAAAGACAAAAAACGAAAGAGAAAGCAGGTTAATGACCTTCGTTTTGAGGAACTAGCGGGAGAATCAAATCGGCGTTTAAAGAAACGGGAACGTAGGAA
AAAATTTCAGGAGGCGAAAAAAAATAAACATAAAAAACCCAAGACAGAGGAGGATCTAGACTTCCCAAGACATGAAAAAATCAAATTTGGAGACGTGGTTGAAGCTCCAC
TGAAGTTGGTTGCAGTTCCGAAGGCATTTAAATCTGCACAAGTTGCTTCACAAGAGAGGAAGCGATTGCAGGCTATAAATGAATATAGAAACCGCAAGGCATGGACCTCA
AGGCCAGGGATACAAATACCTTCAATGGGGATATCGCCCGCTGTC
Protein sequenceShow/hide protein sequence
MGGKGQRRRERNYRAAHGTYDRLPPPPDSSKLDALPSKLRKLMSFTSSRDQESEKVLKDTQDKRKKEAVSSEKKSHPEDARGRTDVKNEGNGGNSEMPQLTDSGDDMQSK
SSEKKDKKRKRKQVNDLRFEELAGESNRRLKKRERRKKFQEAKKNKHKKPKTEEDLDFPRHEKIKFGDVVEAPLKLVAVPKAFKSAQVASQERKRLQAINEYRNRKAWTS
RPGIQIPSMGISPAV