CuGenDBv2

Gene ID	MS007931
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	scaffold13:2516836..2517056
RNA-Seq Expression	MS007931
Synteny	MS007931
Gene Ontology terms	GO:0009536 - plastid (cellular component) GO:0016779 - nucleotidyltransferase activity (molecular function) GO:0097159 - organic cyclic compound binding (molecular function) GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QHB75955.1 RpoB [Cucumis melo subsp. melo]

1.8e-17

71.25

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV LS S+KCIVGTGL RQVARDSGVAAI      +IY D D I+FS N HTRRI LVMYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

YP_009738193.1 RNA polymerase beta subunit [Siraitia siamensis]

9.0e-17

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV LS S+KCIVGTGL RQVARDSGVAAI      +IY D D I+FS N +TRRI LVMYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis]

9.0e-17

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV LS S+KCIVGTGL RQVARDSGVAAI      +IY D D I+FS N +TRRI LVMYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

YP_009753166.1 RNA polymerase subunit beta [Trichosanthes truncata]

9.0e-17

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV LS S+KCIVGTGL RQVARDSGVAAI      +IY D D I+FS N +TRRI LVMYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

YP_009753697.1 RNA polymerase subunit beta [Trichosanthes nervifolia]

9.0e-17

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV LS S+KCIVGTGL RQVARDSGVAAI      +IY D D I+FS N +TRRI LVMYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

TrEMBL top hits

e value

%identity

Alignment

A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta

4.4e-17

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV LS S+KCIVGTGL RQVARDSGVAAI      +IY D D I+FS N +TRRI LVMYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

A0A218KG28 DNA-directed RNA polymerase subunit beta

4.4e-17

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV LS S+KCIVGTGL RQVARDSGVAAI      +IY D D I+FS N +TRRI LVMYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

A0A249RZI0 DNA-directed RNA polymerase subunit beta

4.4e-17

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV LS S+KCIVGTGL RQVARDSGVAAI      +IY D D I+FS N +TRRI LVMYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

A0A6B9MB54 DNA-directed RNA polymerase subunit beta

8.8e-18

71.25

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV LS S+KCIVGTGL RQVARDSGVAAI      +IY D D I+FS N HTRRI LVMYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

A0A6H0ETN6 DNA-directed RNA polymerase subunit beta

4.4e-17

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV LS S+KCIVGTGL RQVARDSGVAAI      +IY D D I+FS N +TRRI LVMYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

SwissProt top hits

e value

%identity

Alignment

A4GYQ0 DNA-directed RNA polymerase subunit beta

3.6e-16

63.75

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV L+ S+KCIVGTGL RQVA DSGV AI      +IY DID I+ S N +T  I LVMYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

A6MM28 DNA-directed RNA polymerase subunit beta

9.3e-17

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV LS S+KCIVGTGL RQ A DSGV+AI      +IY DID I+ S N  T RI LVMYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

P46818 DNA-directed RNA polymerase subunit beta

6.1e-16

61.25

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV LS S+KCIVGTGL RQVA DSGV AI      ++Y D + I+ S NE+T  I L+MYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

Q14FG5 DNA-directed RNA polymerase subunit beta

3.6e-16

63.75

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV L+ S+KCIVGTGL RQVA DSGV AI      +IY DID I+ S N +T  I LVMYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

Q4VZP1 DNA-directed RNA polymerase subunit beta

1.2e-19

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV LS S+KCIVGTGL RQVARDSGVAAI      +IY D D I+FS N +TRRI LVMYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

7.3e-17

62.5

Show/hide

Query:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI
        RALMS +MQ QAV LS S+KCIVGTGL RQVA DSGV AI      ++Y D + IVFS N  T  I L+MYQ SNKNTC+
Subjt:  RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAI------VIYADID-IVFSDNEHTRRILLVMYQSSNKNTCI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

CGTGCTTTAATGAGTTATGATATGCAACATCAAGCAGTGCTGCTTTCTTGGTCCAAAAAATGCATTGTTGGAACTGGATTGTTACGTCAAGTGGCTCGAGATTCAGGGGT
TGCTGCTATAGTCATTTATGCTGATATCGACATCGTTTTTTCGGACAATGAACATACTCGAAGAATTCTATTAGTTATGTATCAAAGTTCTAACAAAAATACTTGTATC

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

RALMSYDMQHQAVLLSWSKKCIVGTGLLRQVARDSGVAAIVIYADIDIVFSDNEHTRRILLVMYQSSNKNTCI

MS007931 (gene) of Bitter gourd (TR) v1 genome