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MS007937 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007937
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold13:2550872..2552523
RNA-Seq ExpressionMS007937
SyntenyMS007937
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]1.5e-3444.75Show/hide
Query:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL
        MFL+RL+   PL DA   L ++A  ADVKF+P    IIVS  SP F+A LQ+S   FT+F+VD N +S++ L   H  ++DG  + +MT HLL+  N+++
Subjt:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL

Query:  LRFEN-SRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE
        LRFE  S ++P    EL LSP + E++G+++YGN  ++ S E R I+ +L  +    +  T+T SQVKFS+ ++EIILTKE
Subjt:  LRFEN-SRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE

XP_016903187.1 PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo]6.2e-4150.56Show/hide
Query:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL
        MFL+RL+   PLFDA   L +IA  AD+KF+P  F II S  SP F+A LQM+   F ++ VD +HTSRI L+S H  L+DG   P+MT HLL N  +L+
Subjt:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL

Query:  LRFENSRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE
        LRFE+S + P+   EL L+PS+EED+GE+DY    SI S + R ++  L  +    IC T T SQVKFS+A++EI+LTKE
Subjt:  LRFENSRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE

XP_022145570.1 uncharacterized protein LOC111014988 [Momordica charantia]3.7e-94100Show/hide
Query:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL
        MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL
Subjt:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL

Query:  LRFENSRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE
        LRFENSRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE
Subjt:  LRFENSRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE

XP_023006010.1 uncharacterized protein LOC111498887 [Cucurbita maxima]2.9e-3043.65Show/hide
Query:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL
        MFL+RL    PL +A   L +I+  AD+KFS +KF +I S  S  F+A  Q+S  FF +++VD NH+SR+ L S +  + DG  + +MT H  E  +R++
Subjt:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL

Query:  LRFENSRNLP-RGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE
        L+FE+S +   +  R L LSPS+EE++G+I +    SI S +FR I+T L ++ N+ I  +LT S+VKF  A+EE ILTKE
Subjt:  LRFENSRNLP-RGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE

XP_031744160.1 uncharacterized protein LOC116404808 [Cucumis sativus]8.4e-3850Show/hide
Query:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL
        MFL+RL+   P F A   L  IA  ADVKF+P  F I VS   P F+A L M+   F ++ VD +HTSRI L+S H  L+DG   P+MT HLL N N+++
Subjt:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL

Query:  LRFENSRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE
        LRFE+S + P+ R EL L PS+EED+GEIDY    SI S   R ++  L  +    IC T T SQVKFS+A++EI+LTKE
Subjt:  LRFENSRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980107.2e-3544.75Show/hide
Query:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL
        MFL+RL+   PL DA   L ++A  ADVKF+P    IIVS  SP F+A LQ+S   FT+F+VD N +S++ L   H  ++DG  + +MT HLL+  N+++
Subjt:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL

Query:  LRFEN-SRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE
        LRFE  S ++P    EL LSP + E++G+++YGN  ++ S E R I+ +L  +    +  T+T SQVKFS+ ++EIILTKE
Subjt:  LRFEN-SRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE

A0A1S4E4N8 uncharacterized protein LOC1035022633.0e-4150.56Show/hide
Query:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL
        MFL+RL+   PLFDA   L +IA  AD+KF+P  F II S  SP F+A LQM+   F ++ VD +HTSRI L+S H  L+DG   P+MT HLL N  +L+
Subjt:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL

Query:  LRFENSRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE
        LRFE+S + P+   EL L+PS+EED+GE+DY    SI S + R ++  L  +    IC T T SQVKFS+A++EI+LTKE
Subjt:  LRFENSRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE

A0A6J1CUU8 uncharacterized protein LOC1110149881.8e-94100Show/hide
Query:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL
        MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL
Subjt:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL

Query:  LRFENSRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE
        LRFENSRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE
Subjt:  LRFENSRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE

A0A6J1H2Z8 uncharacterized protein LOC1114600112.0e-2943.09Show/hide
Query:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL
        MFL+RL    PL +A   L +I+  AD+KFS +KF +I S  S  F+A  Q+S  FF ++ VD NH+SR+ L S ++ +  G ++ +MT H  E  +R++
Subjt:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL

Query:  LRFENSRNL-PRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE
        L+FE+S +   +  R L LSPS+EE++G+I +    SI S +FR I+T L ++ N+ I  +LT S+VKF  A+EE ILTKE
Subjt:  LRFENSRNL-PRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE

A0A6J1KZ05 uncharacterized protein LOC1114988871.4e-3043.65Show/hide
Query:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL
        MFL+RL    PL +A   L +I+  AD+KFS +KF +I S  S  F+A  Q+S  FF +++VD NH+SR+ L S +  + DG  + +MT H  E  +R++
Subjt:  MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLL

Query:  LRFENSRNLP-RGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE
        L+FE+S +   +  R L LSPS+EE++G+I +    SI S +FR I+T L ++ N+ I  +LT S+VKF  A+EE ILTKE
Subjt:  LRFENSRNLP-RGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCTGATCAGGCTTCAGCCAATCGCTCCTCTTTTCGACGCAATCTGCTCTCTCACTCGAATCGCTACACGGGCCGACGTCAAATTCTCGCCCACCAAGTTCTGCAT
AATTGTCTCCCAAATTTCCCCTCCCTTCATCGCGGCGCTGCAAATGTCGCCTGAATTCTTCACCTCCTTTGCCGTGGATGGGAATCACACTTCCAGAATTTGCCTCGACT
CCTTGCACTCTATTTTGATGGATGGCAGGCTCTATCCTGCAATGACCTTCCATCTTCTCGAAAATCAGAATCGCCTGCTCCTTCGATTCGAGAATTCAAGGAATCTGCCT
CGAGGGCGTCGTGAATTGGATTTGTCTCCTTCAGAAGAGGAGGACGTAGGCGAAATTGACTATGGAAATTGTGTTTCAATTGGCTCAGATGAATTCAGAAGCATTGTAAC
AAAGCTATCTGCATACTTCAATCATAGAATTTGTGCTACTTTAACGGATTCTCAAGTCAAGTTCTCTGTTGCAAACGAGGAGATTATTCTCACCAAAGAGGTATTATTCA
TTAAGCAAATTTCTAGCTTTGAAAGTAGT
mRNA sequenceShow/hide mRNA sequence
ATGTTCCTGATCAGGCTTCAGCCAATCGCTCCTCTTTTCGACGCAATCTGCTCTCTCACTCGAATCGCTACACGGGCCGACGTCAAATTCTCGCCCACCAAGTTCTGCAT
AATTGTCTCCCAAATTTCCCCTCCCTTCATCGCGGCGCTGCAAATGTCGCCTGAATTCTTCACCTCCTTTGCCGTGGATGGGAATCACACTTCCAGAATTTGCCTCGACT
CCTTGCACTCTATTTTGATGGATGGCAGGCTCTATCCTGCAATGACCTTCCATCTTCTCGAAAATCAGAATCGCCTGCTCCTTCGATTCGAGAATTCAAGGAATCTGCCT
CGAGGGCGTCGTGAATTGGATTTGTCTCCTTCAGAAGAGGAGGACGTAGGCGAAATTGACTATGGAAATTGTGTTTCAATTGGCTCAGATGAATTCAGAAGCATTGTAAC
AAAGCTATCTGCATACTTCAATCATAGAATTTGTGCTACTTTAACGGATTCTCAAGTCAAGTTCTCTGTTGCAAACGAGGAGATTATTCTCACCAAAGAGGTATTATTCA
TTAAGCAAATTTCTAGCTTTGAAAGTAGT
Protein sequenceShow/hide protein sequence
MFLIRLQPIAPLFDAICSLTRIATRADVKFSPTKFCIIVSQISPPFIAALQMSPEFFTSFAVDGNHTSRICLDSLHSILMDGRLYPAMTFHLLENQNRLLLRFENSRNLP
RGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVTKLSAYFNHRICATLTDSQVKFSVANEEIILTKEVLFIKQISSFESS