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MS007952 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS007952
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold13:2710053..2710286
RNA-Seq ExpressionMS007952
SyntenyMS007952
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]2.7e-2770.13Show/hide
Query:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDC
        LGNA+G FEDVE +   +CWGS LRVRV  D+ KPL RG+KLN+ GPMGG WIPIQYERLPDF + CG+LDH+LKDC
Subjt:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.6e-2465.38Show/hide
Query:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDCD
        LGNA+G F DV+ +E+ + WG+SLR+RV +DI+KPLRRG+K+NI GPMGG WIPIQYERLPDFC+ CG + H   DCD
Subjt:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDCD

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.9e-2172.06Show/hide
Query:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCG
        LGNALG FE+ + D+    WGS+LRVRV LDISKPLRRG+KLN+ GP+GG WIPIQYERLPDFC+ CG
Subjt:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCG

XP_028117212.1 uncharacterized protein LOC114314884 [Camellia sinensis]3.1e-1551.95Show/hide
Query:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDC
        LGN LG F D+E+ +    WG +L +R+ ++I KPLRRGLKL + G     WI +QYERLP+FCF CG L H + DC
Subjt:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDC

XP_042952131.1 uncharacterized protein LOC122289219 [Carya illinoinensis]1.4e-1547.44Show/hide
Query:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDCD
        +GN +GF E+V+ ++    WG  +R+RV +DIS+PL RG+++ + G  G  WI   YERLP+FC+ CGKL H  KDC+
Subjt:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDCD

TrEMBL top hitse value%identityAlignment
A0A2P5F2Z2 Zinc knuckle CX2CX4HX4C9.7e-1550.65Show/hide
Query:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDC
        LGN  G F +VE D+   C G  L VRV +DI+KPLRRG K+ I       W+  +Y RLPDFCF CGK+ H + DC
Subjt:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDC

A0A6J1BSZ1 uncharacterized protein LOC1110054811.3e-2770.13Show/hide
Query:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDC
        LGNA+G FEDVE +   +CWGS LRVRV  D+ KPL RG+KLN+ GPMGG WIPIQYERLPDF + CG+LDH+LKDC
Subjt:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDC

A0A6J1DU55 uncharacterized protein LOC1110231357.9e-2565.38Show/hide
Query:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDCD
        LGNA+G F DV+ +E+ + WG+SLR+RV +DI+KPLRRG+K+NI GPMGG WIPIQYERLPDFC+ CG + H   DCD
Subjt:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDCD

A0A6J1DX30 uncharacterized protein LOC1110248741.4e-2172.06Show/hide
Query:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCG
        LGNALG FE+ + D+    WGS+LRVRV LDISKPLRRG+KLN+ GP+GG WIPIQYERLPDFC+ CG
Subjt:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCG

A0A6P9EID8 uncharacterized protein LOC1183488564.4e-1546.15Show/hide
Query:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDCD
        +GN +G  E+V+ ++    WG  LR+RV ++IS+PL RG+ + + G  G  WI   YERLP+FC+ CGKL H  KDC+
Subjt:  LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDCD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTGGGGAATGCCCTTGGATTTTTTGAAGATGTTGAACATGATGAAGAACGCTATTGCTGGGGCTCAAGCTTGCGAGTTCGAGTTAATTTAGACATCTCCAAGCCTTTAAG
GAGAGGTCTAAAACTGAACATAGCAGGTCCAATGGGAGGAAATTGGATCCCAATCCAATACGAACGACTACCCGACTTTTGCTTCTGTTGTGGTAAGTTGGATCATGTGC
TTAAGGACTGTGAC
mRNA sequenceShow/hide mRNA sequence
TTGGGGAATGCCCTTGGATTTTTTGAAGATGTTGAACATGATGAAGAACGCTATTGCTGGGGCTCAAGCTTGCGAGTTCGAGTTAATTTAGACATCTCCAAGCCTTTAAG
GAGAGGTCTAAAACTGAACATAGCAGGTCCAATGGGAGGAAATTGGATCCCAATCCAATACGAACGACTACCCGACTTTTGCTTCTGTTGTGGTAAGTTGGATCATGTGC
TTAAGGACTGTGAC
Protein sequenceShow/hide protein sequence
LGNALGFFEDVEHDEERYCWGSSLRVRVNLDISKPLRRGLKLNIAGPMGGNWIPIQYERLPDFCFCCGKLDHVLKDCD