CuGenDBv2

Gene ID	MS007968
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RNase H domain-containing protein
Genome location	scaffold754:31600..32013
RNA-Seq Expression	MS007968
Synteny	MS007968
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]

1.2e-14

42.11

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Query:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDIS
        W++ P N WK+N D +W E R VGG+GW+  D    +V AG C IREK+ +  LE   ++ GL+ I       I+LE+DS  V++L+++EDVD++
Subjt:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDIS

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]

1.3e-16

34.06

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Query:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWI
        W     N+WK+N +  W      GG+GW+ +D    V++A    IR ++++ +LE  A+  GLR I+      IHLE+DS   + L+  +  D +EI W+
Subjt:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWI

Query:  VDEIKILLARKSMVSVNFIHREANSTAHQIARLFTEDE
        ++EI  ++    +VS+  I REAN  AH +AR   E++
Subjt:  VDEIKILLARKSMVSVNFIHREANSTAHQIARLFTEDE

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]

3.5e-14

33.83

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Query:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGY-DIHLETDSHGVVKLVEEEDVDISEICW
        W   P++ W +N D +W +    GG+GW+ +     +V AG  ++    +VK LEA A+L GLRN+ NL     +H+ETDS  V  L+  +  D+++  W
Subjt:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGY-DIHLETDSHGVVKLVEEEDVDISEICW

Query:  IVDEIKILLARKSMVSVNFIHREANSTAHQIAR
        +V+EI  L     +++   + RE N  AH +A+
Subjt:  IVDEIKILLARKSMVSVNFIHREANSTAHQIAR

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]

1.4e-15

33.56

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Query:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGL--------RNIQNLEGYDIHLETDSHGVVKLVEEEDV
        W     N+WK+N D  W      GG+GW+ +D    V++A    IR ++++ +LE  A+  GL        R IQ      IHLE+DS   + L+  +  
Subjt:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGL--------RNIQNLEGYDIHLETDSHGVVKLVEEEDV

Query:  DISEICWIVDEIKILLARKSMVSVNFIHREANSTAHQIARLFTEDE
        D +EI W+++EI  ++    +VS+  I REAN  AH +AR   E++
Subjt:  DISEICWIVDEIKILLARKSMVSVNFIHREANSTAHQIARLFTEDE

XP_024041100.1 uncharacterized protein LOC112098855 isoform X1 [Citrus clementina]

1.4e-10

32.61

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Query:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWI
        WN  PI  +K+N+D          G+G V +DSS  ++ A       +  V  +EA A+L G++     +   I +E+DS  VV+L  +    ++EICW 
Subjt:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWI

Query:  VDEIKILLARKSMVSVNFIHREANSTAHQIARLFTEDE
        V+EI+  L  +S  S+ F+HR  N  AH +A++  + E
Subjt:  VDEIKILLARKSMVSVNFIHREANSTAHQIARLFTEDE

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CP26 uncharacterized protein LOC111013412

6.3e-17

34.06

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Query:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWI
        W     N+WK+N +  W      GG+GW+ +D    V++A    IR ++++ +LE  A+  GLR I+      IHLE+DS   + L+  +  D +EI W+
Subjt:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWI

Query:  VDEIKILLARKSMVSVNFIHREANSTAHQIARLFTEDE
        ++EI  ++    +VS+  I REAN  AH +AR   E++
Subjt:  VDEIKILLARKSMVSVNFIHREANSTAHQIARLFTEDE

A0A6J1CQG0 uncharacterized protein LOC111013216

5.9e-15

42.11

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Query:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDIS
        W++ P N WK+N D +W E R VGG+GW+  D    +V AG C IREK+ +  LE   ++ GL+ I       I+LE+DS  V++L+++EDVD++
Subjt:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDIS

A0A6J1D5W1 uncharacterized protein LOC111017329

1.2e-10

27.34

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Query:  APINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVDE
        +P N WK+N D  W   + VGG+GW+ ++    + +AG   I + + + +LE  A+  G+  + +     + +E++S   + L++    +++EI W+V +
Subjt:  APINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVDE

Query:  IKILLARKSMVSVNFIHREANSTAHQIA
        IK    R  +     + R+ NS A +IA
Subjt:  IKILLARKSMVSVNFIHREANSTAHQIA

A0A6J1DNV9 uncharacterized protein LOC111022403

1.7e-14

33.83

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Query:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGY-DIHLETDSHGVVKLVEEEDVDISEICW
        W   P++ W +N D +W +    GG+GW+ +     +V AG  ++    +VK LEA A+L GLRN+ NL     +H+ETDS  V  L+  +  D+++  W
Subjt:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGY-DIHLETDSHGVVKLVEEEDVDISEICW

Query:  IVDEIKILLARKSMVSVNFIHREANSTAHQIAR
        +V+EI  L     +++   + RE N  AH +A+
Subjt:  IVDEIKILLARKSMVSVNFIHREANSTAHQIAR

A0A6J1DSV1 uncharacterized protein LOC111023608

7.0e-16

33.56

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Query:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGL--------RNIQNLEGYDIHLETDSHGVVKLVEEEDV
        W     N+WK+N D  W      GG+GW+ +D    V++A    IR ++++ +LE  A+  GL        R IQ      IHLE+DS   + L+  +  
Subjt:  WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGL--------RNIQNLEGYDIHLETDSHGVVKLVEEEDV

Query:  DISEICWIVDEIKILLARKSMVSVNFIHREANSTAHQIARLFTEDE
        D +EI W+++EI  ++    +VS+  I REAN  AH +AR   E++
Subjt:  DISEICWIVDEIKILLARKSMVSVNFIHREANSTAHQIARLFTEDE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G10000.1 Ribonuclease H-like superfamily protein

3.5e-04

27.64

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Query:  MDTTWFEGRRVGGVGWV--AQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLAR
        +D  W +   + G GWV  A   S+  +       R   S    EA+A+   + +   LE  D+ + +DS  +V  +   +V ++EI  ++ EI+ +  R
Subjt:  MDTTWFEGRRVGGVGWV--AQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLAR

Query:  KSMVSVNFIHREANSTAHQIARL
           +S  FI R  NS A   A+L
Subjt:  KSMVSVNFIHREANSTAHQIARL

AT1G52990.1 thioredoxin family protein

2.1e-04

23.66

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Query:  NSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIV
        +S P    K N D +  EG  V G+GW+ ++S   V++ G    + + + +  E  AL+  ++         +  E D+  V +L+  +  D   +   +
Subjt:  NSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIV

Query:  DEIKILLARKSMVSVNFIHREANSTAHQIAR
        D IK  +   +     F HRE N  A  + +
Subjt:  DEIKILLARKSMVSVNFIHREANSTAHQIAR

Sequences

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CDS sequence

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TGGAACTCAGCTCCAATTAATACGTGGAAAATGAACATGGACACAACTTGGTTTGAGGGAAGACGAGTTGGGGGCGTTGGCTGGGTCGCCCAAGACTCAAGCGACATGGT
GGTGCAAGCTGGATATTGCTACATTAGAGAGAAACAAAGTGTTAAATTCTTGGAAGCTTTTGCTCTTCTTCATGGTTTGAGAAATATTCAGAATCTAGAAGGATACGACA
TTCACCTTGAAACTGACTCTCATGGAGTGGTGAAGTTGGTGGAGGAGGAGGATGTCGACATCTCTGAAATTTGTTGGATAGTGGACGAAATCAAGATTTTGCTGGCCCGG
AAGTCAATGGTCTCGGTCAATTTTATTCACCGAGAGGCTAACAGCACGGCTCATCAGATTGCCCGATTGTTCACTGAAGATGAA

mRNA sequence

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Protein sequence

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WNSAPINTWKMNMDTTWFEGRRVGGVGWVAQDSSDMVVQAGYCYIREKQSVKFLEAFALLHGLRNIQNLEGYDIHLETDSHGVVKLVEEEDVDISEICWIVDEIKILLAR
KSMVSVNFIHREANSTAHQIARLFTEDE

MS007968 (gene) of Bitter gourd (TR) v1 genome