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MS008026 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS008026
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibosomal protein S10
Genome locationscaffold284:222142..222426
RNA-Seq ExpressionMS008026
SyntenyMS008026
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001848 - Ribosomal protein S10
IPR027486 - Ribosomal protein S10 domain
IPR036838 - Ribosomal protein S10 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAD25546.1 TPA_asm: hypothetical protein HUJ06_027010 [Nelumbo nucifera]4.6e-3788.04Show/hide
Query:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR
        +QKE PPKVTTTKIRIVIRSFDHPF ENHFWGLPPYTRKIGLP+SRV Y +LRSP IDKK REQFEMEIKKQFLVIKTE HEL KKFFRLKR
Subjt:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR

KAF4348321.1 hypothetical protein F8388_018561 [Cannabis sativa]1.2e-3790.22Show/hide
Query:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR
        +QKERPPKVTTTKIRIVIRSFDHPFFENHF GLPPYTRKIGLP+SRV Y +LRSP IDKK REQFEMEIKKQFLVIKTERHEL KKFFRLKR
Subjt:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR

KAF4379538.1 hypothetical protein F8388_023555 [Cannabis sativa]2.7e-3789.13Show/hide
Query:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR
        +QK+RPPKVTTTKIRIVIRSFDHPFFENHF GLPPYTRKIGLP+SRV Y +LRSP IDKK REQFEMEIKKQFLVIKTERHEL KKFFRLKR
Subjt:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR

QLA48235.1 ribosomal protein S10 [Medinilla magnifica]2.4e-3889.13Show/hide
Query:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR
        +QKERPPKVTTTKIRIVIRSFDHPF ENH WGLPPYTRKIGLP+SRVNY +LRSP IDKK REQFE+EIKKQFLVIKTERHEL KKFFRLKR
Subjt:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR

QVJ97849.1 hypothetical protein [Apium graveolens]2.1e-3789.13Show/hide
Query:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR
        +QKERPPKVTTTKIRIVIRSFDHPFFEN FWGLPPYTRKIGLP+SRV Y +LRSP IDKK REQFEMEIKKQFLVIK ERHEL KKFFRLKR
Subjt:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR

TrEMBL top hitse value%identityAlignment
A0A151UHR2 Ribosomal_S10 domain-containing protein4.9e-3786.96Show/hide
Query:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR
        +QKERPPKVTTTKIRIVIRSFDHPFFENHF GLPPYTRKIGLP+SRV Y +LRSP IDKK REQFEMEIKK+FL+IKTE+HEL KKFFRLKR
Subjt:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR

A0A7D9MX58 Ribosomal protein S101.2e-3889.13Show/hide
Query:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR
        +QKERPPKVTTTKIRIVIRSFDHPF ENH WGLPPYTRKIGLP+SRVNY +LRSP IDKK REQFE+EIKKQFLVIKTERHEL KKFFRLKR
Subjt:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR

A0A7J6DQE3 Ribosomal_S10 domain-containing protein5.8e-3890.22Show/hide
Query:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR
        +QKERPPKVTTTKIRIVIRSFDHPFFENHF GLPPYTRKIGLP+SRV Y +LRSP IDKK REQFEMEIKKQFLVIKTERHEL KKFFRLKR
Subjt:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR

A0A7J6G9N2 Ribosomal_S10 domain-containing protein1.3e-3789.13Show/hide
Query:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR
        +QK+RPPKVTTTKIRIVIRSFDHPFFENHF GLPPYTRKIGLP+SRV Y +LRSP IDKK REQFEMEIKKQFLVIKTERHEL KKFFRLKR
Subjt:  NQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR

A0A7L8ZUP8 Ribosomal protein S106.4e-3785.26Show/hide
Query:  KKRNQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR
        K+R QKERPPKVTTTKIRIVIRSFDHPFFEN+FWGLPPYTRKIGLP+SRV Y +LRSP IDKK REQFEMEIK +FLVIKTE HEL KKFF LKR
Subjt:  KKRNQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR

SwissProt top hitse value%identityAlignment
A0LII9 30S ribosomal protein S102.4e-0432.89Show/hide
Query:  VTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIG--------LPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVI
        +T  +IRI ++++DH   +     +    +K G        LP     Y +LRSP +DKK REQFE+ + K+ + I
Subjt:  VTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIG--------LPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVI

P26869 Ribosomal protein S10, mitochondrial5.7e-1459.26Show/hide
Query:  TTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLK
        T KI IVI+S     FEN   GL   TRKIGLPK +  Y +LRSP IDKK REQFEM I KQ LVI+TE H+L +K   LK
Subjt:  TTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLK

P42797 40S ribosomal protein S10, mitochondrial2.6e-1954.74Show/hide
Query:  KKRNQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR
        +K   +E   K+  TKI I IRSF +P  E   W LPP+TRK+ +P +R  Y +LRSP +DKK REQFEM  KK+FLVIK + HEL KK F LKR
Subjt:  KKRNQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR

P51428 Ribosomal protein S10, mitochondrial2.3e-3182.93Show/hide
Query:  TTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR
        TTKIRIVIRSFDHPF ENHF GLPPYT KIGLP+SRV Y +LRSP IDKK REQFEMEIKK++LVIKTE+HEL KKFF LKR
Subjt:  TTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR

Q6AP72 30S ribosomal protein S103.1e-0434.21Show/hide
Query:  VTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIG--------LPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVI
        + T KIRI ++++DH   +     +    R+ G        LP S   + +LRSP ++KK REQFEM   ++ L I
Subjt:  VTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIG--------LPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVI

Arabidopsis top hitse value%identityAlignment
AT3G22300.1 ribosomal protein S101.9e-2054.74Show/hide
Query:  KKRNQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR
        +K   +E   K+  TKI I IRSF +P  E   W LPP+TRK+ +P +R  Y +LRSP +DKK REQFEM  KK+FLVIK + HEL KK F LKR
Subjt:  KKRNQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGAAGAGAAACCAAAAGGAAAGACCACCAAAAGTCACGACCACCAAGATACGTATAGTGATTCGATCTTTTGATCACCCATTTTTTGAAAACCATTTTTGGGGG
CTTCCGCCTTACACACGGAAGATTGGATTGCCTAAATCACGAGTCAACTATATTATGTTACGATCACCTGATATTGATAAAAAGTTCAGAGAACAATTTGAAATG
GAAATCAAGAAACAATTTCTGGTCATAAAAACAGAAAGGCATGAATTGCACAAGAAGTTCTTTCGATTAAAACGT
mRNA sequenceShow/hide mRNA sequence
AAGAAGAGAAACCAAAAGGAAAGACCACCAAAAGTCACGACCACCAAGATACGTATAGTGATTCGATCTTTTGATCACCCATTTTTTGAAAACCATTTTTGGGGG
CTTCCGCCTTACACACGGAAGATTGGATTGCCTAAATCACGAGTCAACTATATTATGTTACGATCACCTGATATTGATAAAAAGTTCAGAGAACAATTTGAAATG
GAAATCAAGAAACAATTTCTGGTCATAAAAACAGAAAGGCATGAATTGCACAAGAAGTTCTTTCGATTAAAACGT
Protein sequenceShow/hide protein sequence
KKRNQKERPPKVTTTKIRIVIRSFDHPFFENHFWGLPPYTRKIGLPKSRVNYIMLRSPDIDKKFREQFEMEIKKQFLVIKTERHELHKKFFRLKR